Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45695655..45697491-chr6:45699108..45701289,3	MCF-7	breast:
2	chr6:45389822..45391497-chr6:45695096..45697896,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124813	Chromatin interaction

rSNPs within LD-proxies of this variant (count:5)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45692800-45696400	Weak transcription	Fetal Lung	lung
2	chr6:45692800-45696400	Weak transcription	HSMMtube	muscle
3	chr6:45692800-45696400	Weak transcription	NHEK	skin
4	chr6:45692800-45696400	Weak transcription	Osteobl	bone
5	chr6:45693000-45696400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:45694400-45696400	Weak transcription	Fetal Stomach	stomach
7	chr6:45695000-45696800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:45695200-45696200	Enhancers	Esophagus	oesophagus
9	chr6:45695200-45697200	Enhancers	Hela-S3	cervix
10	chr6:45695600-45696400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:45695600-45696600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:45695600-45696800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:45695600-45696800	Enhancers	Fetal Muscle Leg	muscle
14	chr6:45695600-45697200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:45695800-45696400	Enhancers	Brain Germinal Matrix	brain
16	chr6:45695800-45696800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr6:45695800-45696800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:45695800-45696800	Enhancers	HMEC	breast
19	chr6:45695800-45697000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:45696000-45696200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:45696000-45696200	Enhancers	Fetal Muscle Trunk	muscle

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