Variant report

Variant	rs73739820
Chromosome Location	chr7:141070972-141070973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56216313	0.86[ASN][1000 genomes]
rs73739814	0.90[ASN][1000 genomes]
rs73739815	0.90[ASN][1000 genomes]
rs73739821	0.89[ASN][1000 genomes]
rs73739822	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831160	chr7:141009011-141188046	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv34135	chr7:141047454-141492898	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv3429325	chr7:141064185-141196253	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:141062600-141081800	Weak transcription	Fetal Brain Female	brain
2	chr7:141065200-141071400	Weak transcription	Right Ventricle	heart
3	chr7:141066400-141071800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:141067400-141074200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:141067400-141075600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:141067800-141071400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:141068600-141071200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:141070200-141071400	Weak transcription	Left Ventricle	heart
9	chr7:141070200-141071400	Weak transcription	Right Atrium	heart
10	chr7:141070200-141081600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr7:141070400-141071400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr7:141070800-141071200	Enhancers	Brain Angular Gyrus	brain
13	chr7:141070800-141072800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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