Variant report

Variant	rs73740626
Chromosome Location	chr7:147097870-147097871
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11981610	1.00[AMR][1000 genomes]
rs17170409	1.00[AMR][1000 genomes]
rs17170548	1.00[AMR][1000 genomes]
rs73740611	1.00[AMR][1000 genomes]
rs73740612	1.00[AMR][1000 genomes]
rs73740613	1.00[AMR][1000 genomes]
rs73740615	1.00[AMR][1000 genomes]
rs73740629	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740937	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740938	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147095400-147120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147097200-147098000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
3	chr7:147097200-147098200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:147097200-147098400	Enhancers	HSMM	muscle
5	chr7:147097400-147098000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:147097400-147098000	Active TSS	Duodenum Mucosa	Duodenum
7	chr7:147097400-147098200	Flanking Active TSS	Osteobl	bone
8	chr7:147097600-147098000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr7:147097600-147098200	Enhancers	Adipose Nuclei	Adipose
10	chr7:147097800-147098000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:147097800-147098000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:147097800-147098000	Enhancers	Brain Germinal Matrix	brain
13	chr7:147097800-147098000	Flanking Active TSS	Fetal Lung	lung
14	chr7:147097800-147098400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:147097800-147098400	Enhancers	HSMMtube	muscle
16	chr7:147097800-147107600	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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