Variant report

Variant	rs73740938
Chromosome Location	chr7:147113147-147113148
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11981610	1.00[AMR][1000 genomes]
rs17170409	1.00[AMR][1000 genomes]
rs17170548	1.00[AMR][1000 genomes]
rs73740611	1.00[AMR][1000 genomes]
rs73740612	1.00[AMR][1000 genomes]
rs73740613	1.00[AMR][1000 genomes]
rs73740615	1.00[AMR][1000 genomes]
rs73740626	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740629	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv608954	chr7:147104887-147145576	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv1024540	chr7:147105149-147138125	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147095400-147120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147111000-147113200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:147111600-147113200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:147111600-147116200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr7:147112800-147113400	Enhancers	HSMM	muscle
6	chr7:147112800-147113600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:147113000-147113400	Enhancers	Osteobl	bone
8	chr7:147113000-147113600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr7:147113000-147113600	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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