Variant report

Variant	rs73746095
Chromosome Location	chr5:27315407-27315408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:27307590..27311526-chr5:27313597..27315707,3	K562	blood:
2	chr5:27219696..27221313-chr5:27313999..27316596,2	K562	blood:
3	chr5:27314869..27317667-chr5:27318478..27321360,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10058813	0.86[EUR][1000 genomes]
rs12153780	0.89[EUR][1000 genomes]
rs12188151	0.83[EUR][1000 genomes]
rs1382909	0.83[EUR][1000 genomes]
rs16896634	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16896639	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16896645	0.89[EUR][1000 genomes]
rs16896651	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16896657	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16896665	0.89[EUR][1000 genomes]
rs16896676	0.86[EUR][1000 genomes]
rs16899573	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1993951	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1993952	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34502	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3846563	0.89[EUR][1000 genomes]
rs3966086	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4367261	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73065921	0.86[EUR][1000 genomes]
rs73065935	0.89[EUR][1000 genomes]
rs73065948	0.86[EUR][1000 genomes]
rs73067906	0.86[EUR][1000 genomes]
rs73746096	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73746097	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73746098	0.89[EUR][1000 genomes]
rs73746099	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73746100	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7701855	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7716017	0.86[EUR][1000 genomes]
rs7716845	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7718306	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868856	chr5:26789778-27321390	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
2	esv3450425	chr5:27134073-27323407	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv881286	chr5:27135351-27770554	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv880298	chr5:27193573-27659111	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv880326	chr5:27193573-27743375	Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv881387	chr5:27264941-27373862	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv880623	chr5:27279981-27559659	Enhancers ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv880525	chr5:27308254-27447863	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv880974	chr5:27308663-27357356	Flanking Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv1029060	chr5:27313831-27411288	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:27311200-27317800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr5:27312200-27316000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:27312800-27320600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:27313000-27316200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:27313400-27315600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:27314800-27316000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:27315000-27315800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:27315000-27316000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:27315200-27315600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr5:27315200-27316000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:27315200-27316000	Enhancers	Hela-S3	cervix
12	chr5:27315200-27316000	Enhancers	Osteobl	bone
13	chr5:27315200-27316200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr5:27315200-27316600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:27315200-27316600	Enhancers	NH-A	brain
16	chr5:27315200-27316800	Enhancers	NHEK	skin
17	chr5:27315200-27317000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr5:27315200-27317600	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr5:27315200-27317800	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr5:27315400-27316000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr5:27315400-27316600	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr5:27315400-27316600	Enhancers	HMEC	breast
23	chr5:27315400-27316800	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr5:27315400-27316800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr5:27315400-27316800	Enhancers	Fetal Heart	heart
26	chr5:27315400-27317000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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