Variant report

Variant	rs73746642
Chromosome Location	chr6:34434511-34434512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34391617..34394715-chr6:34431838..34435722,3	MCF-7	breast:
2	chr6:34433144..34435297-chr6:34663197..34665594,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270800	Chromatin interaction
ENSG00000196821	Chromatin interaction
ENSG00000272288	Chromatin interaction
ENSG00000124614	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6903333	1.00[AMR][1000 genomes]
rs73746667	1.00[AMR][1000 genomes]
rs73746670	1.00[AMR][1000 genomes]
rs7766502	1.00[AMR][1000 genomes]
rs9469800	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv2758046	chr6:34382492-34714677	Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv2759418	chr6:34382492-34714677	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv462904	chr6:34416388-34493012	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	nsv602903	chr6:34416388-34493012	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
8	nsv885786	chr6:34426884-34542662	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34433000-34434600	Active TSS	H9 Cell Line	embryonic stem cell
2	chr6:34433000-34434600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
3	chr6:34433000-34434600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
4	chr6:34433000-34434600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr6:34433000-34434800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr6:34433200-34434600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr6:34433200-34434800	Enhancers	Fetal Brain Male	brain
8	chr6:34433400-34434600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr6:34433400-34434600	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:34433400-34435200	Active TSS	Brain Angular Gyrus	brain
11	chr6:34433400-34435200	Active TSS	Brain Anterior Caudate	brain
12	chr6:34433400-34435200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
13	chr6:34433600-34434600	Bivalent Enhancer	Fetal Thymus	thymus
14	chr6:34433600-34435000	Enhancers	Primary B cells from peripheral blood	blood
15	chr6:34433600-34435000	Active TSS	HSMMtube	muscle
16	chr6:34433800-34434800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:34434000-34435000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
18	chr6:34434000-34436600	Active TSS	Brain Inferior Temporal Lobe	brain
19	chr6:34434000-34437200	Enhancers	GM12878-XiMat	blood
20	chr6:34434000-34439400	Weak transcription	Liver	Liver
21	chr6:34434200-34434600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:34434200-34434600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:34434200-34434600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
24	chr6:34434200-34434600	Bivalent Enhancer	Fetal Stomach	stomach
25	chr6:34434200-34441200	Weak transcription	Right Atrium	heart
26	chr6:34434400-34434600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
27	chr6:34434400-34434600	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:34434400-34434600	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:34434400-34434600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
30	chr6:34434400-34434800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
31	chr6:34434400-34434800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
32	chr6:34434400-34434800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:34434400-34434800	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
34	chr6:34434400-34434800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
35	chr6:34434400-34434800	Bivalent Enhancer	Fetal Muscle Leg	muscle
36	chr6:34434400-34435200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:34434400-34435800	Weak transcription	Primary B cells from cord blood	blood
38	chr6:34434400-34443200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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