Variant report

Variant	rs73746667
Chromosome Location	chr6:34483243-34483244
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34483206..34485571-chr6:34540552..34542756,2	K562	blood:
2	chr6:34482918..34485421-chr6:35035460..35037570,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6903333	1.00[AMR][1000 genomes]
rs73746642	1.00[AMR][1000 genomes]
rs73746670	1.00[AMR][1000 genomes]
rs7766502	1.00[AMR][1000 genomes]
rs9469800	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv2758046	chr6:34382492-34714677	Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv2759418	chr6:34382492-34714677	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv462904	chr6:34416388-34493012	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	nsv602903	chr6:34416388-34493012	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
8	nsv885786	chr6:34426884-34542662	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
9	esv1813536	chr6:34455242-34545123	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
10	nsv885787	chr6:34458533-34546560	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
11	nsv885788	chr6:34464010-34551912	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
12	nsv1033583	chr6:34471572-34828372	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
13	nsv885789	chr6:34474939-34546560	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
14	nsv1033325	chr6:34482287-34517857	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
15	nsv885790	chr6:34483015-34542662	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
16	nsv885791	chr6:34483015-34546560	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
17	nsv516578	chr6:34483015-34561585	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34441400-34494000	Weak transcription	Right Atrium	heart
2	chr6:34479000-34485200	Enhancers	Fetal Brain Male	brain
3	chr6:34482200-34483400	Active TSS	H9 Cell Line	embryonic stem cell
4	chr6:34482200-34484400	Active TSS	Brain Cingulate Gyrus	brain
5	chr6:34482200-34484400	Flanking Active TSS	Brain Germinal Matrix	brain
6	chr6:34482400-34483400	Enhancers	Brain Substantia Nigra	brain
7	chr6:34482400-34484000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:34482400-34485000	Active TSS	Brain Anterior Caudate	brain
9	chr6:34482600-34483400	Bivalent Enhancer	Fetal Muscle Leg	muscle
10	chr6:34482800-34483400	Flanking Active TSS	Fetal Brain Female	brain
11	chr6:34482800-34483400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr6:34482800-34483600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:34482800-34483800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr6:34483000-34483400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:34483000-34483400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr6:34483000-34483400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
17	chr6:34483000-34483400	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
18	chr6:34483000-34483600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:34483000-34483600	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr6:34483000-34483600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
21	chr6:34483000-34484000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
22	chr6:34483000-34484200	Active TSS	Brain Angular Gyrus	brain
23	chr6:34483200-34483400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:34483200-34483400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
25	chr6:34483200-34483400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
26	chr6:34483200-34483600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
27	chr6:34483200-34483600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:34483200-34483600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:34483200-34483600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:34483200-34483800	Bivalent Enhancer	Fetal Stomach	stomach
31	chr6:34483200-34484000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:34483200-34484200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
33	chr6:34483200-34484200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:34483200-34484600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:34483200-34484600	Weak transcription	K562	blood
36	chr6:34483200-34484800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:34483200-34486200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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