Variant report

Variant	rs73746656
Chromosome Location	chr6:34459283-34459284
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34440695..34443428-chr6:34457495..34459339,2	MCF-7	breast:
2	chr6:34454834..34457480-chr6:34459014..34462062,4	K562	blood:
3	chr6:34458604..34460671-chr6:34480867..34482983,2	K562	blood:
4	chr6:34450820..34454475-chr6:34457385..34459321,3	K562	blood:

Variant related genes	Relation type
ENSG00000124507	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57018638	1.00[ASN][1000 genomes]
rs60916679	1.00[ASN][1000 genomes]
rs73405687	1.00[ASN][1000 genomes]
rs73746659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73746661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73746663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7745896	1.00[ASN][1000 genomes]
rs7764733	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469783	1.00[ASN][1000 genomes]
rs9469795	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv2758046	chr6:34382492-34714677	Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv2759418	chr6:34382492-34714677	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv462904	chr6:34416388-34493012	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	nsv602903	chr6:34416388-34493012	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
8	nsv885786	chr6:34426884-34542662	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
9	esv1813536	chr6:34455242-34545123	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
10	nsv885787	chr6:34458533-34546560	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34441400-34494000	Weak transcription	Right Atrium	heart
2	chr6:34444600-34468200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:34454400-34461000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:34454400-34464800	Weak transcription	Thymus	Thymus
5	chr6:34455200-34459800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:34458000-34459400	Enhancers	Fetal Muscle Leg	muscle
7	chr6:34458000-34459600	Enhancers	Fetal Stomach	stomach
8	chr6:34458200-34459400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr6:34458200-34459400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:34458200-34459400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:34458200-34459400	Enhancers	Fetal Muscle Trunk	muscle
12	chr6:34458400-34459400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:34458400-34459400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr6:34458400-34459400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:34458400-34459400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:34458400-34459400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:34458400-34459600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr6:34458600-34459400	Enhancers	H1 Cell Line	embryonic stem cell
19	chr6:34458600-34459400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:34458800-34459400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:34458800-34459400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:34458800-34459400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:34458800-34459400	Flanking Active TSS	Rectal Smooth Muscle	rectum
24	chr6:34458800-34459400	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr6:34459000-34459400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:34459000-34459400	Enhancers	Esophagus	oesophagus
27	chr6:34459000-34459400	Enhancers	Ovary	ovary
28	chr6:34459000-34459400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr6:34459000-34459400	Bivalent Enhancer	HepG2	liver
30	chr6:34459000-34459400	Enhancers	HSMM	muscle
31	chr6:34459000-34459400	Enhancers	HSMMtube	muscle
32	chr6:34459000-34459400	Flanking Active TSS	K562	blood
33	chr6:34459000-34459400	Enhancers	NHEK	skin
34	chr6:34459200-34459400	Flanking Active TSS	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links