Variant report

Variant	rs7764733
Chromosome Location	chr6:34458705-34458706
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34440695..34443428-chr6:34457495..34459339,2	MCF-7	breast:
2	chr6:34458604..34460671-chr6:34480867..34482983,2	K562	blood:
3	chr6:34450820..34454475-chr6:34457385..34459321,3	K562	blood:

Variant related genes	Relation type
ENSG00000124507	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2233647	1.00[TSI][hapmap]
rs3798558	1.00[CHB][hapmap]
rs57018638	1.00[ASN][1000 genomes]
rs60916679	1.00[ASN][1000 genomes]
rs73405687	1.00[ASN][1000 genomes]
rs73746656	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73746659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73746661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73746663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7745896	1.00[ASN][1000 genomes]
rs9469783	1.00[ASN][1000 genomes]
rs9469795	1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv2758046	chr6:34382492-34714677	Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv2759418	chr6:34382492-34714677	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv462904	chr6:34416388-34493012	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	nsv602903	chr6:34416388-34493012	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
8	nsv885786	chr6:34426884-34542662	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
9	esv1813536	chr6:34455242-34545123	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
10	nsv885787	chr6:34458533-34546560	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34441400-34494000	Weak transcription	Right Atrium	heart
2	chr6:34444600-34468200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:34451000-34458800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:34454400-34459000	Weak transcription	NHEK	skin
5	chr6:34454400-34461000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:34454400-34464800	Weak transcription	Thymus	Thymus
7	chr6:34455200-34459800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:34456000-34458800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:34456200-34459200	Weak transcription	Right Ventricle	heart
10	chr6:34456400-34458800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:34458000-34459400	Enhancers	Fetal Muscle Leg	muscle
12	chr6:34458000-34459600	Enhancers	Fetal Stomach	stomach
13	chr6:34458200-34459000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr6:34458200-34459000	Enhancers	K562	blood
15	chr6:34458200-34459200	Active TSS	Stomach Smooth Muscle	stomach
16	chr6:34458200-34459400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr6:34458200-34459400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:34458200-34459400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:34458200-34459400	Enhancers	Fetal Muscle Trunk	muscle
20	chr6:34458400-34458800	Active TSS	Rectal Smooth Muscle	rectum
21	chr6:34458400-34458800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr6:34458400-34459000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
23	chr6:34458400-34459000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:34458400-34459000	Enhancers	Fetal Thymus	thymus
25	chr6:34458400-34459000	Flanking Active TSS	HSMM	muscle
26	chr6:34458400-34459200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:34458400-34459200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:34458400-34459200	Enhancers	Primary hematopoietic stem cells	blood
29	chr6:34458400-34459200	Active TSS	Colon Smooth Muscle	Colon
30	chr6:34458400-34459400	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr6:34458400-34459400	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr6:34458400-34459400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:34458400-34459400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:34458400-34459400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:34458400-34459600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr6:34458600-34458800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:34458600-34459000	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr6:34458600-34459000	Flanking Active TSS	Ovary	ovary
39	chr6:34458600-34459000	Flanking Bivalent TSS/Enh	HepG2	liver
40	chr6:34458600-34459000	Flanking Active TSS	HSMMtube	muscle
41	chr6:34458600-34459200	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr6:34458600-34459200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:34458600-34459200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:34458600-34459200	Bivalent Enhancer	Adipose Nuclei	Adipose
45	chr6:34458600-34459400	Enhancers	H1 Cell Line	embryonic stem cell
46	chr6:34458600-34459400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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