Variant report

Variant	rs7374783
Chromosome Location	chr3:178468269-178468270
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10804873	1.00[LWK][hapmap]
rs12498072	0.82[CHB][hapmap]
rs13072498	0.81[CHB][hapmap]
rs4398411	0.92[CEU][hapmap];0.86[CHB][hapmap];0.97[GIH][hapmap];0.92[TSI][hapmap]
rs4498019	1.00[LWK][hapmap]
rs4626080	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap]
rs4626081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6443569	0.82[CHB][hapmap]
rs6443571	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6443574	0.82[CHB][hapmap]
rs6443576	0.81[CHB][hapmap]
rs6443580	0.82[CHB][hapmap]
rs6784107	0.82[CHB][hapmap]
rs6789294	0.82[CHB][hapmap]
rs6808415	0.82[CHB][hapmap]
rs7611115	0.92[CEU][hapmap]
rs7624046	0.85[CHB][hapmap]
rs7624351	0.82[CHB][hapmap]
rs7626901	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap]
rs7644458	0.81[CHB][hapmap]
rs7647997	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9290665	0.81[CHB][hapmap]
rs9290666	0.89[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9290668	0.81[CHB][hapmap]
rs9819505	0.82[CHB][hapmap]
rs9832846	0.86[CHB][hapmap];0.95[JPT][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178461000-178495200	Weak transcription	HSMM	muscle
2	chr3:178466600-178469000	Enhancers	Fetal Brain Female	brain
3	chr3:178467000-178469600	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr3:178467000-178472200	Weak transcription	GM12878-XiMat	blood
5	chr3:178467600-178468600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:178468200-178468400	Weak transcription	HSMMtube	muscle
7	chr3:178468200-178468600	Enhancers	Fetal Heart	heart
8	chr3:178468200-178468600	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr3:178468200-178468600	Enhancers	Right Atrium	heart
10	chr3:178468200-178468600	Flanking Active TSS	Stomach Mucosa	stomach
11	chr3:178468200-178469200	Enhancers	Rectal Mucosa Donor 29	rectum

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