Variant report

Variant	rs73750109
Chromosome Location	chr5:41270660-41270661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16871097	1.00[AMR][1000 genomes]
rs16871107	1.00[AMR][1000 genomes]
rs2018813	0.82[AFR][1000 genomes]
rs59742466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7725305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9763598	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41268000-41271400	Weak transcription	Ovary	ovary
2	chr5:41269400-41272600	Enhancers	Fetal Heart	heart
3	chr5:41270200-41271000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:41270400-41270800	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr5:41270400-41271000	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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