Variant report

Variant	rs7725305
Chromosome Location	chr5:41268209-41268210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16871097	1.00[AMR][1000 genomes]
rs16871107	1.00[AMR][1000 genomes]
rs2018813	0.82[AFR][1000 genomes]
rs59742466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9763598	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41264400-41270400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:41264600-41269000	Weak transcription	Right Ventricle	heart
3	chr5:41264600-41270200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:41264800-41270400	Weak transcription	Stomach Mucosa	stomach
5	chr5:41265600-41268600	Weak transcription	Fetal Heart	heart
6	chr5:41266800-41270200	Weak transcription	Fetal Intestine Small	intestine
7	chr5:41267400-41269000	Weak transcription	Fetal Intestine Large	intestine
8	chr5:41268000-41271400	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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