Variant report
| Variant | rs73751413 |
|---|---|
| Chromosome Location | chr6:82074245-82074246 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:82061373..82063037-chr6:82072058..82074412,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10943814 | 1.00[AMR][1000 genomes] |
| rs1419031 | 1.00[AMR][1000 genomes] |
| rs6906164 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6911333 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6914841 | 1.00[AMR][1000 genomes] |
| rs9294227 | 1.00[AMR][1000 genomes] |
| rs9443904 | 1.00[AMR][1000 genomes] |
| rs9443906 | 1.00[AMR][1000 genomes] |
| rs9443917 | 1.00[AMR][1000 genomes] |
| rs9443918 | 1.00[AMR][1000 genomes] |
| rs9449301 | 1.00[AMR][1000 genomes] |
| rs9449306 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9449315 | 1.00[AMR][1000 genomes] |
| rs9449317 | 1.00[AMR][1000 genomes] |
| rs9449334 | 1.00[AMR][1000 genomes] |
| rs9449335 | 1.00[AMR][1000 genomes] |
| rs9449337 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv604087 | chr6:81792413-82326091 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032655 | chr6:81942397-82225830 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv886328 | chr6:82036764-82120647 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:82071200-82074400 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
