Variant report

Variant	rs9449306
Chromosome Location	chr6:82072524-82072525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10943814	1.00[AMR][1000 genomes]
rs1419031	1.00[AMR][1000 genomes]
rs6906164	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6911333	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6914841	1.00[AMR][1000 genomes]
rs73751413	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9294227	1.00[AMR][1000 genomes]
rs9443904	1.00[AMR][1000 genomes]
rs9443906	1.00[AMR][1000 genomes]
rs9443917	1.00[AMR][1000 genomes]
rs9443918	1.00[AMR][1000 genomes]
rs9449301	1.00[AMR][1000 genomes]
rs9449315	1.00[AMR][1000 genomes]
rs9449317	1.00[AMR][1000 genomes]
rs9449334	1.00[AMR][1000 genomes]
rs9449335	1.00[AMR][1000 genomes]
rs9449337	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv886328	chr6:82036764-82120647	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82071200-82072600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:82071200-82074400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:82071600-82072800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:82071600-82072800	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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