Variant report

Variant	rs73752220
Chromosome Location	chr5:41708706-41708707
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs60293641	1.00[AFR][1000 genomes]
rs73750198	1.00[AFR][1000 genomes]
rs73750403	1.00[AFR][1000 genomes]
rs73752208	1.00[AFR][1000 genomes]
rs73752212	1.00[AFR][1000 genomes]
rs73752219	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3404444	chr5:41701527-41744979	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41707400-41708800	Enhancers	Osteobl	bone
2	chr5:41707600-41708800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:41708000-41708800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr5:41708400-41708800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:41708400-41708800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:41708400-41708800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:41708400-41708800	Flanking Active TSS	HSMMtube	muscle
8	chr5:41708400-41709000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:41708400-41709000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:41708600-41709000	Enhancers	HSMM	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links