Variant report

Variant	rs73754092
Chromosome Location	chr6:92400586-92400587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr6:92400332-92400596	HepG2	liver:	n/a	chr6:92400491-92400506 chr6:92400468-92400483
2	MAFF	chr6:92400333-92400599	HepG2	liver:	n/a	chr6:92400490-92400508 chr6:92400467-92400485

Variant related genes	Relation type
CASC6	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12524449	1.00[ASN][1000 genomes]
rs12526843	1.00[ASN][1000 genomes]
rs12527374	1.00[ASN][1000 genomes]
rs12527832	1.00[ASN][1000 genomes]
rs12528326	1.00[ASN][1000 genomes]
rs12530024	1.00[ASN][1000 genomes]
rs2027375	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2145530	1.00[EUR][1000 genomes]
rs34572282	1.00[ASN][1000 genomes]
rs3928828	1.00[EUR][1000 genomes]
rs57577917	1.00[EUR][1000 genomes]
rs59615627	1.00[EUR][1000 genomes]
rs6923562	1.00[EUR][1000 genomes]
rs73516612	1.00[EUR][1000 genomes]
rs73522539	1.00[EUR][1000 genomes]
rs73522545	1.00[EUR][1000 genomes]
rs73522547	1.00[EUR][1000 genomes]
rs73522554	1.00[EUR][1000 genomes]
rs73522560	1.00[EUR][1000 genomes]
rs73522579	1.00[EUR][1000 genomes]
rs73522581	1.00[EUR][1000 genomes]
rs73524288	1.00[EUR][1000 genomes]
rs73754094	1.00[ASN][1000 genomes]
rs882276	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017467	chr6:91802015-92417554	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv538360	chr6:91802015-92417554	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1034981	chr6:92280070-92530848	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1018145	chr6:92328392-92951562	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv428491	chr6:92329694-92474678	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1028736	chr6:92362109-92423792	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
7	nsv1067623	chr6:92383159-92939893	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv531366	chr6:92383159-92939893	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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