Variant report

Variant	rs2145530
Chromosome Location	chr6:92364957-92364958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs3928828	1.00[EUR][1000 genomes]
rs57577917	1.00[EUR][1000 genomes]
rs59615627	1.00[EUR][1000 genomes]
rs6923562	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73516612	1.00[EUR][1000 genomes]
rs73522539	1.00[EUR][1000 genomes]
rs73522545	1.00[EUR][1000 genomes]
rs73522547	1.00[EUR][1000 genomes]
rs73522554	1.00[EUR][1000 genomes]
rs73522560	1.00[EUR][1000 genomes]
rs73522579	1.00[EUR][1000 genomes]
rs73522581	1.00[EUR][1000 genomes]
rs73524288	1.00[EUR][1000 genomes]
rs73754092	1.00[EUR][1000 genomes]
rs7760849	1.00[CEU][hapmap]
rs882276	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017467	chr6:91802015-92417554	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv538360	chr6:91802015-92417554	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1034981	chr6:92280070-92530848	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1018145	chr6:92328392-92951562	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv428491	chr6:92329694-92474678	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1028736	chr6:92362109-92423792	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:92363000-92365800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:92363200-92365000	Enhancers	Fetal Brain Male	brain
3	chr6:92363400-92365000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:92364000-92365000	Enhancers	Adipose Nuclei	Adipose
5	chr6:92364200-92365200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:92364200-92365400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:92364400-92365000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:92364400-92365000	Enhancers	Brain Anterior Caudate	brain
9	chr6:92364400-92365000	Enhancers	Fetal Brain Female	brain
10	chr6:92364400-92365200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:92364400-92365200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:92364400-92365200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:92364400-92365400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:92364400-92365400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:92364400-92365400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr6:92364600-92365400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:92364800-92365200	Enhancers	Brain Germinal Matrix	brain
18	chr6:92364800-92367400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:92364800-92369400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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