Variant report

Variant	rs73756506
Chromosome Location	chr5:29697706-29697707
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:29694176..29695942-chr5:29696440..29698391,2	MCF-7	breast:
2	chr5:29367229..29368191-chr5:29697633..29698544,4	MCF-7	breast:
3	chr5:29690755..29693202-chr5:29696667..29699518,2	MCF-7	breast:
4	chr5:29367148..29368248-chr5:29697562..29698574,8	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11950082	0.96[EUR][1000 genomes]
rs12153014	0.90[EUR][1000 genomes]
rs12153649	0.90[EUR][1000 genomes]
rs13359640	0.96[EUR][1000 genomes]
rs1350216	1.00[EUR][1000 genomes]
rs1379066	0.87[EUR][1000 genomes]
rs2330141	0.87[EUR][1000 genomes]
rs2330142	0.93[AFR][1000 genomes]
rs2877065	0.87[EUR][1000 genomes]
rs3100956	0.87[EUR][1000 genomes]
rs3100957	0.87[EUR][1000 genomes]
rs3114521	0.87[EUR][1000 genomes]
rs73754729	1.00[EUR][1000 genomes]
rs73754730	1.00[EUR][1000 genomes]
rs73754733	1.00[EUR][1000 genomes]
rs73754734	1.00[EUR][1000 genomes]
rs73754735	1.00[EUR][1000 genomes]
rs73754736	1.00[EUR][1000 genomes]
rs73754737	1.00[EUR][1000 genomes]
rs73756507	0.93[AFR][1000 genomes]
rs7442717	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016603	chr5:29102713-29843965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv537712	chr5:29102713-29843965	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv1031329	chr5:29177677-29760923	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv537713	chr5:29177677-29760923	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	esv2760923	chr5:29512112-29716652	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv3385368	chr5:29548608-29910057	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv830244	chr5:29630122-29790611	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3520513	chr5:29675244-29712272	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3520514	chr5:29675244-29712272	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29697400-29698400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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