Variant report

Variant	rs73761710
Chromosome Location	chr6:107078155-107078156
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:107076762-107078628	GM18505	blood:	n/a	n/a
2	POLR2A	chr6:107076645-107078679	GM12878	blood:	n/a	n/a
3	POLR2A	chr6:107076625-107078631	HepG2	liver:	n/a	n/a
4	POLR2A	chr6:107077108-107078680	MCF10A-Er-Src	breast:	n/a	n/a
5	MAFK	chr6:107078085-107078413	HepG2	liver:	n/a	n/a
6	REST	chr6:107076916-107078299	H1-neurons	neurons:	n/a	chr6:107077230-107077243
7	POLR2A	chr6:107076724-107078607	GM19099	blood:	n/a	n/a
8	GTF2F1	chr6:107076965-107078200	Hela-S3	cervix:	n/a	n/a
9	EP300	chr6:107078031-107078231	GM12878	blood:	n/a	n/a
10	TBP	chr6:107077063-107078159	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr6:107076286-107078697	GM12891	blood:	n/a	n/a
12	YY1	chr6:107076783-107078158	SK-N-SH	brain:	n/a	chr6:107077462-107077474 chr6:107077182-107077191 chr6:107077463-107077471
13	POLR2A	chr6:107076298-107078655	GM19193	blood:	n/a	n/a
14	POLR2A	chr6:107076731-107078592	GM18951	blood:	n/a	n/a
15	HCFC1	chr6:107076360-107078680	Hela-S3	cervix:	n/a	n/a
16	SMC3	chr6:107076666-107078232	Hela-S3	cervix:	n/a	n/a
17	POLR2A	chr6:107076669-107078398	Hela-S3	cervix:	n/a	n/a
18	MAFK	chr6:107076929-107078481	Hela-S3	cervix:	n/a	n/a
19	NFYB	chr6:107076970-107078570	GM12878	blood:	n/a	chr6:107077377-107077392 chr6:107077377-107077392 chr6:107077415-107077430
20	MXI1	chr6:107076290-107078403	SK-N-SH	brain:	n/a	n/a
21	POLR2A	chr6:107076527-107078679	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
RTN4IP1	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11964773	0.81[EUR][1000 genomes]
rs34221917	0.85[ASN][1000 genomes]
rs55832745	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57628923	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61042372	0.91[EUR][1000 genomes]
rs73761709	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107076200-107078400	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr6:107076200-107079400	Active TSS	K562	blood
3	chr6:107076200-107080600	Active TSS	GM12878-XiMat	blood
4	chr6:107076400-107078200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:107076400-107078200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:107076400-107078200	Active TSS	Stomach Smooth Muscle	stomach
7	chr6:107076400-107078400	Active TSS	H1 Cell Line	embryonic stem cell
8	chr6:107076400-107078400	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr6:107076400-107078400	Active TSS	Psoas Muscle	Psoas
10	chr6:107076400-107078400	Active TSS	Right Atrium	heart
11	chr6:107076400-107078400	Active TSS	HMEC	breast
12	chr6:107076400-107078400	Active TSS	HSMMtube	muscle
13	chr6:107076400-107078600	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr6:107076400-107078600	Active TSS	A549	lung
15	chr6:107076400-107078800	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr6:107076400-107078800	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr6:107076600-107078200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:107076600-107078200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:107076600-107078200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:107076600-107078200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:107076600-107078200	Active TSS	Fetal Stomach	stomach
22	chr6:107076600-107078200	Active TSS	Left Ventricle	heart
23	chr6:107076600-107078200	Active TSS	HSMM	muscle
24	chr6:107076600-107078200	Active TSS	NH-A	brain
25	chr6:107076600-107078200	Active TSS	NHLF	lung
26	chr6:107076600-107078400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
27	chr6:107076600-107078400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:107076600-107078400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:107076600-107078400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:107076600-107078400	Active TSS	Brain Germinal Matrix	brain
31	chr6:107076600-107078400	Active TSS	Colonic Mucosa	Colon
32	chr6:107076600-107078400	Active TSS	Fetal Intestine Large	intestine
33	chr6:107076600-107078400	Active TSS	Fetal Intestine Small	intestine
34	chr6:107076600-107078400	Active TSS	Ovary	ovary
35	chr6:107076600-107078400	Active TSS	Right Ventricle	heart
36	chr6:107076600-107078400	Active TSS	Stomach Mucosa	stomach
37	chr6:107076600-107078600	Active TSS	H9 Cell Line	embryonic stem cell
38	chr6:107076600-107078600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr6:107076600-107078600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr6:107076600-107078600	Active TSS	Fetal Muscle Trunk	muscle
41	chr6:107076600-107078800	Active TSS	iPS-20b Cell Line	embryonic stem cell
42	chr6:107076800-107078200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:107076800-107078200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:107076800-107078200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:107076800-107078200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:107076800-107078200	Active TSS	Breast Myoepithelial Primary Cells	Breast
47	chr6:107076800-107078200	Active TSS	Muscle Satellite Cultured Cells	--
48	chr6:107076800-107078200	Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr6:107076800-107078200	Active TSS	Brain Anterior Caudate	brain
50	chr6:107076800-107078200	Active TSS	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links