Variant report

Variant	rs34221917
Chromosome Location	chr6:107100396-107100397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12660628	0.95[EUR][1000 genomes]
rs12663415	0.95[EUR][1000 genomes]
rs3804343	0.95[EUR][1000 genomes]
rs56390046	0.81[EUR][1000 genomes]
rs6910496	0.95[EUR][1000 genomes]
rs72613239	0.92[EUR][1000 genomes]
rs72613240	0.95[EUR][1000 genomes]
rs73761710	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107078600-107100400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr6:107078600-107103800	Weak transcription	Fetal Brain Male	brain
3	chr6:107078600-107104200	Weak transcription	Brain Angular Gyrus	brain
4	chr6:107078600-107106200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:107078600-107106600	Weak transcription	NH-A	brain
6	chr6:107078600-107110200	Weak transcription	NHLF	lung
7	chr6:107078600-107110800	Weak transcription	Fetal Heart	heart
8	chr6:107078600-107115200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:107078600-107125200	Weak transcription	Stomach Mucosa	stomach
10	chr6:107085000-107112800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:107085400-107114000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:107086400-107104400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:107087200-107112600	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr6:107087400-107106200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:107087800-107104000	Strong transcription	Dnd41	blood
16	chr6:107088000-107104000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:107088000-107106000	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:107088000-107108000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:107088200-107106200	Weak transcription	Small Intestine	intestine
20	chr6:107089000-107104600	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr6:107089000-107105800	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr6:107090000-107109000	Strong transcription	Liver	Liver
23	chr6:107090800-107100400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:107090800-107108000	Weak transcription	Pancreas	Pancrea
25	chr6:107091000-107104000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:107091400-107111600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr6:107092000-107104400	Weak transcription	Esophagus	oesophagus
28	chr6:107092000-107106200	Weak transcription	Psoas Muscle	Psoas
29	chr6:107092200-107107600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:107092400-107104000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:107092600-107101200	Weak transcription	Aorta	Aorta
32	chr6:107092600-107104400	Weak transcription	Spleen	Spleen
33	chr6:107092800-107101200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:107092800-107116400	Weak transcription	Brain Substantia Nigra	brain
35	chr6:107094000-107103600	Weak transcription	Colonic Mucosa	Colon
36	chr6:107094000-107106200	Weak transcription	HSMMtube	muscle
37	chr6:107094200-107100800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:107094200-107101400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:107094200-107102600	Weak transcription	K562	blood
40	chr6:107094200-107106000	Weak transcription	NHDF-Ad	bronchial
41	chr6:107094400-107100600	Weak transcription	Brain Anterior Caudate	brain
42	chr6:107094600-107101000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr6:107094600-107106200	Weak transcription	NHEK	skin
44	chr6:107094800-107101200	Weak transcription	Lung	lung
45	chr6:107095400-107104000	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr6:107096000-107105200	Strong transcription	Adipose Nuclei	Adipose
47	chr6:107096000-107106000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:107096000-107106000	Strong transcription	Placenta	Placenta
49	chr6:107096200-107104800	Strong transcription	Duodenum Mucosa	Duodenum
50	chr6:107096200-107105800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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