Variant report

Variant	rs56390046
Chromosome Location	chr6:107094789-107094790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10499045	0.95[AFR][1000 genomes]
rs12660628	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12663415	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34221917	0.81[EUR][1000 genomes]
rs3804343	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6910496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72613239	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72613240	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107078600-107100200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:107078600-107100400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr6:107078600-107103800	Weak transcription	Fetal Brain Male	brain
4	chr6:107078600-107104200	Weak transcription	Brain Angular Gyrus	brain
5	chr6:107078600-107106200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:107078600-107106600	Weak transcription	NH-A	brain
7	chr6:107078600-107110200	Weak transcription	NHLF	lung
8	chr6:107078600-107110800	Weak transcription	Fetal Heart	heart
9	chr6:107078600-107115200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:107078600-107125200	Weak transcription	Stomach Mucosa	stomach
11	chr6:107085000-107112800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:107085400-107100200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:107085400-107114000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:107086400-107104400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:107086600-107098200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:107087200-107112600	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr6:107087400-107106200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:107087600-107095600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:107087800-107094800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:107087800-107095400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr6:107087800-107104000	Strong transcription	Dnd41	blood
22	chr6:107088000-107095400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:107088000-107104000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:107088000-107106000	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:107088000-107108000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:107088200-107095000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:107088200-107106200	Weak transcription	Small Intestine	intestine
28	chr6:107088400-107095600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:107089000-107095600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:107089000-107104600	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr6:107089000-107105800	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr6:107089200-107097200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:107090000-107095600	Strong transcription	Placenta	Placenta
34	chr6:107090000-107109000	Strong transcription	Liver	Liver
35	chr6:107090200-107098600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:107090600-107100000	Weak transcription	Gastric	stomach
37	chr6:107090600-107100000	Weak transcription	Right Ventricle	heart
38	chr6:107090800-107100400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr6:107090800-107108000	Weak transcription	Pancreas	Pancrea
40	chr6:107091000-107100000	Weak transcription	HUVEC	blood vessel
41	chr6:107091000-107104000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:107091200-107097800	Weak transcription	Hela-S3	cervix
43	chr6:107091200-107098000	Weak transcription	HepG2	liver
44	chr6:107091200-107099200	Weak transcription	Fetal Kidney	kidney
45	chr6:107091400-107094800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:107091400-107095000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr6:107091400-107100000	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr6:107091400-107111600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr6:107091600-107100200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr6:107092000-107104400	Weak transcription	Esophagus	oesophagus

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