Variant report

Variant	rs12663415
Chromosome Location	chr6:107094157-107094158
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10499045	0.86[YRI][hapmap];0.95[AFR][1000 genomes]
rs12660628	0.94[CHB][hapmap];0.86[JPT][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34221917	0.95[EUR][1000 genomes]
rs3804343	0.94[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56390046	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6910496	0.87[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72613239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72613240	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107078600-107100200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:107078600-107100400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr6:107078600-107103800	Weak transcription	Fetal Brain Male	brain
4	chr6:107078600-107104200	Weak transcription	Brain Angular Gyrus	brain
5	chr6:107078600-107106200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:107078600-107106600	Weak transcription	NH-A	brain
7	chr6:107078600-107110200	Weak transcription	NHLF	lung
8	chr6:107078600-107110800	Weak transcription	Fetal Heart	heart
9	chr6:107078600-107115200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:107078600-107125200	Weak transcription	Stomach Mucosa	stomach
11	chr6:107085000-107112800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:107085400-107100200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:107085400-107114000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:107086000-107094200	Strong transcription	Primary T cells from cord blood	blood
15	chr6:107086400-107104400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:107086600-107094400	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:107086600-107098200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:107087200-107112600	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr6:107087400-107094200	Weak transcription	A549	lung
20	chr6:107087400-107106200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:107087600-107095600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr6:107087800-107094400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:107087800-107094400	Strong transcription	Duodenum Mucosa	Duodenum
24	chr6:107087800-107094600	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr6:107087800-107094600	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr6:107087800-107094800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:107087800-107095400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr6:107087800-107104000	Strong transcription	Dnd41	blood
29	chr6:107088000-107094600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr6:107088000-107095400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:107088000-107104000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:107088000-107106000	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr6:107088000-107108000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:107088200-107094600	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr6:107088200-107095000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:107088200-107106200	Weak transcription	Small Intestine	intestine
37	chr6:107088400-107094600	Strong transcription	Primary B cells from peripheral blood	blood
38	chr6:107088400-107095600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr6:107088800-107094400	Strong transcription	Primary B cells from cord blood	blood
40	chr6:107088800-107094400	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr6:107089000-107095600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:107089000-107104600	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr6:107089000-107105800	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr6:107089200-107094400	Strong transcription	GM12878-XiMat	blood
45	chr6:107089200-107097200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:107089400-107094400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr6:107089400-107094600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:107089800-107094400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr6:107089800-107094600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:107089800-107094600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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