Variant report

Variant	rs72613240
Chromosome Location	chr6:107104720-107104721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:107095658..107097842-chr6:107102032..107104797,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10499045	0.92[AFR][1000 genomes]
rs12660628	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12663415	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34221917	0.95[EUR][1000 genomes]
rs3804343	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56390046	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6910496	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72613239	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv516902	chr6:107104374-107115394	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107078600-107106200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:107078600-107106600	Weak transcription	NH-A	brain
3	chr6:107078600-107110200	Weak transcription	NHLF	lung
4	chr6:107078600-107110800	Weak transcription	Fetal Heart	heart
5	chr6:107078600-107115200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:107078600-107125200	Weak transcription	Stomach Mucosa	stomach
7	chr6:107085000-107112800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:107085400-107114000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:107087200-107112600	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:107087400-107106200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:107088000-107106000	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:107088000-107108000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:107088200-107106200	Weak transcription	Small Intestine	intestine
14	chr6:107089000-107105800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr6:107090000-107109000	Strong transcription	Liver	Liver
16	chr6:107090800-107108000	Weak transcription	Pancreas	Pancrea
17	chr6:107091400-107111600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr6:107092000-107106200	Weak transcription	Psoas Muscle	Psoas
19	chr6:107092200-107107600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:107092800-107116400	Weak transcription	Brain Substantia Nigra	brain
21	chr6:107094000-107106200	Weak transcription	HSMMtube	muscle
22	chr6:107094200-107106000	Weak transcription	NHDF-Ad	bronchial
23	chr6:107094600-107106200	Weak transcription	NHEK	skin
24	chr6:107096000-107105200	Strong transcription	Adipose Nuclei	Adipose
25	chr6:107096000-107106000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:107096000-107106000	Strong transcription	Placenta	Placenta
27	chr6:107096200-107104800	Strong transcription	Duodenum Mucosa	Duodenum
28	chr6:107096200-107105800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:107096400-107104800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr6:107096400-107104800	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr6:107096400-107105200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr6:107096400-107106000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr6:107096400-107106200	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr6:107096400-107109000	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr6:107096600-107104800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:107096600-107104800	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr6:107096600-107106400	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr6:107097000-107105000	Weak transcription	HMEC	breast
39	chr6:107097000-107105800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr6:107097600-107105400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:107098000-107104800	Strong transcription	HepG2	liver
42	chr6:107098000-107105400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:107098200-107105200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:107098200-107105200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:107098200-107106200	Strong transcription	Fetal Thymus	thymus
46	chr6:107098600-107106800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:107098800-107104800	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr6:107098800-107106200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr6:107099000-107105200	Strong transcription	GM12878-XiMat	blood
50	chr6:107099000-107105400	Strong transcription	Primary hematopoietic stem cells	blood

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