Variant report

Variant	rs73768435
Chromosome Location	chr6:113741470-113741471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57996396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61338105	0.87[AFR][1000 genomes]
rs73768429	1.00[AMR][1000 genomes]
rs73768431	1.00[AMR][1000 genomes]
rs73768434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73768438	1.00[AMR][1000 genomes]
rs73768440	1.00[AMR][1000 genomes]
rs73768443	1.00[AFR][1000 genomes]
rs73768447	1.00[AFR][1000 genomes]
rs73768450	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113736000-113747200	Weak transcription	HMEC	breast
2	chr6:113741200-113741600	Weak transcription	Pancreas	Pancrea
3	chr6:113741400-113742000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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