Variant report

Variant	rs61338105
Chromosome Location	chr6:113758842-113758843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs57996396	0.87[AFR][1000 genomes]
rs73765222	1.00[AMR][1000 genomes]
rs73765223	1.00[AMR][1000 genomes]
rs73765226	1.00[AMR][1000 genomes]
rs73765227	1.00[AMR][1000 genomes]
rs73765228	1.00[AMR][1000 genomes]
rs73765230	1.00[AMR][1000 genomes]
rs73768426	1.00[AMR][1000 genomes]
rs73768434	0.87[AFR][1000 genomes]
rs73768435	0.87[AFR][1000 genomes]
rs73768443	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73768445	1.00[AMR][1000 genomes]
rs73768447	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73768450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1018357	chr6:113748468-113781070	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113755800-113767800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:113756200-113762800	Weak transcription	A549	lung
3	chr6:113758600-113759000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:113758600-113759200	Enhancers	Osteobl	bone
5	chr6:113758800-113759000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:113758800-113759400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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