Variant report

Variant	rs73770478
Chromosome Location	chr5:88446578-88446579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55763742	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55962744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56144146	1.00[AMR][1000 genomes]
rs56166481	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58741262	1.00[AMR][1000 genomes]
rs59398300	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73770475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73770501	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772108	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772114	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772118	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772136	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772138	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772140	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772141	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772153	1.00[AMR][1000 genomes]
rs7713191	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532159	chr5:88016214-88783092	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv533373	chr5:88062497-89028098	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv532160	chr5:88150666-88564477	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	nsv529543	chr5:88348147-88783092	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:88439200-88450200	Weak transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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