Variant report

Variant	rs73772140
Chromosome Location	chr5:88582688-88582689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:88580612..88583012-chr5:88586746..88589180,2	K562	blood:
2	chr5:88576659..88578719-chr5:88581884..88583555,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55763742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55854004	1.00[AMR][1000 genomes]
rs55962744	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56144146	1.00[AMR][1000 genomes]
rs56166481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58741262	1.00[AMR][1000 genomes]
rs59135582	1.00[AMR][1000 genomes]
rs59398300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59784242	1.00[AMR][1000 genomes]
rs6452822	1.00[AMR][1000 genomes]
rs6898669	1.00[AMR][1000 genomes]
rs73770475	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73770478	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73770501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772108	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772114	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772118	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772153	1.00[AMR][1000 genomes]
rs73772160	1.00[AMR][1000 genomes]
rs73772161	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772165	1.00[AMR][1000 genomes]
rs73772166	1.00[AMR][1000 genomes]
rs7713191	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532159	chr5:88016214-88783092	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv533373	chr5:88062497-89028098	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv529543	chr5:88348147-88783092	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv830387	chr5:88547862-88682442	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv830388	chr5:88578939-88793870	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:88576200-88589200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr5:88577800-88583800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:88578800-88585000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr5:88579800-88585200	Weak transcription	Osteobl	bone
5	chr5:88579800-88585400	Weak transcription	NH-A	brain
6	chr5:88580000-88585200	Weak transcription	HSMMtube	muscle
7	chr5:88581600-88587000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:88581800-88586800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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