Variant report

Variant	rs73771166
Chromosome Location	chr5:90331709-90331710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10514343	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11952993	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11955946	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12188068	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12188249	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12189005	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17572843	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3850657	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55792004	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56106025	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56258383	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62376462	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62376463	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62376490	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62376491	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6861614	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6880626	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6888979	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6889138	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv882369	chr5:90275825-90344149	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
4	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90323600-90332800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:90324200-90332800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:90324200-90332800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:90324600-90335200	Weak transcription	Small Intestine	intestine
5	chr5:90324600-90350400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:90329400-90333600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:90329600-90333600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr5:90329600-90334200	Weak transcription	Psoas Muscle	Psoas
9	chr5:90330800-90332800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:90330800-90333000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr5:90330800-90333400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr5:90330800-90338000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:90331000-90332800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr5:90331000-90332800	Weak transcription	Colon Smooth Muscle	Colon
15	chr5:90331000-90333600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr5:90331200-90332800	Weak transcription	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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