Variant report

Variant	rs73771687
Chromosome Location	chr6:127742259-127742260
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:127742199-127742280	MCF10A-Er-Src	breast:	n/a	n/a
2	RAD21	chr6:127741455-127742285	SK-N-SH	brain:	n/a	chr6:127742234-127742246
3	JUND	chr6:127741586-127742261	H1-hESC	embryonic stem cell:	n/a	chr6:127742077-127742086 chr6:127741815-127741825 chr6:127741769-127741780 chr6:127741770-127741779 chr6:127741814-127741825 chr6:127741815-127741825 chr6:127741770-127741780 chr6:127741770-127741780 chr6:127741815-127741825 chr6:127741812-127741823 chr6:127741770-127741780 chr6:127741815-127741825 chr6:127741770-127741780
4	CTCF	chr6:127741497-127742390	A549	lung:	n/a	chr6:127741780-127741798
5	JUND	chr6:127741479-127742584	SK-N-SH	brain:	n/a	chr6:127742077-127742086 chr6:127741815-127741825 chr6:127741769-127741780 chr6:127741770-127741779 chr6:127741814-127741825 chr6:127741815-127741825 chr6:127741770-127741780 chr6:127741770-127741780 chr6:127741815-127741825 chr6:127741812-127741823 chr6:127741770-127741780 chr6:127741815-127741825 chr6:127741770-127741780
6	SP1	chr6:127741559-127742263	HCT-116	colon:	n/a	chr6:127742074-127742095

No.	Distal block	Cell Line	Cell type
1	chr6:127623606..127624647-chr6:127741293..127742295,4	K562	blood:
2	chr6:127665440..127667332-chr6:127741973..127744614,2	MCF-7	breast:
3	chr6:127623451..127624500-chr6:127741516..127742270,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000220522	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55633254	1.00[AFR][1000 genomes]
rs61656375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771691	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771692	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430461	chr6:127727308-127754317	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127741000-127742600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:127741200-127742400	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr6:127741200-127742400	Enhancers	HUVEC	blood vessel
4	chr6:127741200-127742400	Enhancers	Osteobl	bone
5	chr6:127741600-127742400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:127741600-127742400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:127741600-127742400	Enhancers	HMEC	breast
8	chr6:127741800-127742400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:127741800-127742400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:127741800-127742400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:127741800-127742400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:127741800-127742400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr6:127741800-127742400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:127741800-127742400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:127741800-127742400	Enhancers	Colon Smooth Muscle	Colon
16	chr6:127741800-127742400	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr6:127741800-127742400	Enhancers	NH-A	brain
18	chr6:127741800-127742400	Enhancers	NHEK	skin
19	chr6:127741800-127742600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:127741800-127743000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr6:127742000-127742400	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr6:127742000-127742400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr6:127742000-127742400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:127742000-127742400	Enhancers	Rectal Smooth Muscle	rectum
25	chr6:127742200-127742400	Enhancers	HSMM	muscle
26	chr6:127742200-127742400	Enhancers	NHDF-Ad	bronchial
27	chr6:127742200-127742600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:127742200-127742600	Enhancers	A549	lung
29	chr6:127742200-127743000	Weak transcription	Psoas Muscle	Psoas
30	chr6:127742200-127743600	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr6:127742200-127744400	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr6:127742200-127744400	Weak transcription	Primary B cells from peripheral blood	blood
33	chr6:127742200-127744800	Weak transcription	Primary B cells from cord blood	blood
34	chr6:127742200-127744800	Weak transcription	GM12878-XiMat	blood
35	chr6:127742200-127745000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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