Variant report

Variant	rs73771692
Chromosome Location	chr6:127840396-127840397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr6:127840395-127840800	A549	lung:	n/a	chr6:127840539-127840550
2	MAX	chr6:127839750-127840796	H1-hESC	embryonic stem cell:	n/a	chr6:127840526-127840533
3	TCF12	chr6:127839705-127840919	A549	lung:	n/a	chr6:127840462-127840469
4	SP1	chr6:127839804-127840810	A549	lung:	n/a	chr6:127840197-127840206 chr6:127840541-127840550 chr6:127840180-127840194 chr6:127840177-127840186 chr6:127840540-127840554
5	ELF1	chr6:127840211-127840509	A549	lung:	n/a	n/a
6	MYC	chr6:127840310-127840794	H1-hESC	embryonic stem cell:	n/a	chr6:127840526-127840533
7	GATA3	chr6:127839680-127840957	A549	lung:	n/a	chr6:127840584-127840597 chr6:127840724-127840735
8	MAX	chr6:127839303-127840795	SK-N-SH	brain:	n/a	chr6:127839543-127839554 chr6:127839543-127839554 chr6:127839545-127839554 chr6:127839544-127839553 chr6:127839542-127839555 chr6:127840526-127840533 chr6:127839544-127839553 chr6:127839544-127839553
9	YY1	chr6:127840277-127840810	H1-hESC	embryonic stem cell:	n/a	chr6:127840539-127840550
10	REST	chr6:127840207-127840850	SK-N-SH	brain:	n/a	n/a
11	MAX	chr6:127839275-127840942	A549	lung:	n/a	chr6:127839543-127839554 chr6:127839543-127839554 chr6:127839545-127839554 chr6:127839544-127839553 chr6:127839542-127839555 chr6:127840526-127840533 chr6:127839544-127839553 chr6:127839544-127839553
12	YY1	chr6:127840214-127840892	SK-N-SH	brain:	n/a	chr6:127840539-127840550
13	CREB1	chr6:127840318-127840661	A549	lung:	n/a	n/a
14	MAX	chr6:127839408-127840719	A549	lung:	n/a	chr6:127839543-127839554 chr6:127839543-127839554 chr6:127839545-127839554 chr6:127839544-127839553 chr6:127839542-127839555 chr6:127840526-127840533 chr6:127839544-127839553 chr6:127839544-127839553
15	REST	chr6:127840281-127840865	U87	brain:	n/a	n/a
16	BACH1	chr6:127840346-127840731	H1-hESC	embryonic stem cell:	n/a	n/a
17	ZNF263	chr6:127839828-127840850	HEK293-T-REx	kidney:	n/a	n/a
18	REST	chr6:127840217-127841865	A549	lung:	n/a	n/a
19	TCF12	chr6:127840298-127840637	H1-hESC	embryonic stem cell:	n/a	chr6:127840462-127840469
20	POLR2A	chr6:127840174-127840768	H1-hESC	embryonic stem cell:	n/a	n/a
21	SIN3AK20	chr6:127839778-127840644	SK-N-SH	brain:	n/a	n/a
22	TCF12	chr6:127839509-127840845	SK-N-SH	brain:	n/a	chr6:127840462-127840469
23	JUND	chr6:127840368-127840729	A549	lung:	n/a	n/a
24	FOSL2	chr6:127840254-127840464	A549	lung:	n/a	n/a
25	REST	chr6:127840250-127840667	SK-N-SH	brain:	n/a	n/a
26	CREB1	chr6:127840320-127840668	H1-hESC	embryonic stem cell:	n/a	n/a
27	REST	chr6:127835497-127841917	H1-neurons	neurons:	n/a	chr6:127836324-127836332 chr6:127835726-127835739
28	POLR2A	chr6:127840188-127840719	A549	lung:	n/a	n/a
29	FOSL2	chr6:127840199-127840784	A549	lung:	n/a	n/a
30	YY1	chr6:127839704-127840853	SK-N-SH_RA	brain:	n/a	chr6:127840539-127840550 chr6:127840197-127840208
31	POLR2A	chr6:127840389-127840690	A549	lung:	n/a	n/a
32	MYC	chr6:127840257-127840813	A549	lung:	n/a	chr6:127840526-127840533
33	CHD2	chr6:127839719-127840633	H1-hESC	embryonic stem cell:	n/a	n/a
34	SP1	chr6:127840198-127840799	A549	lung:	n/a	chr6:127840541-127840550 chr6:127840540-127840554
35	ZNF143	chr6:127839810-127840711	H1-hESC	embryonic stem cell:	n/a	n/a
36	SIN3AK20	chr6:127840281-127840804	H1-hESC	embryonic stem cell:	n/a	n/a
37	POLR2A	chr6:127840204-127840667	A549	lung:	n/a	n/a
38	MXI1	chr6:127839392-127840682	H1-hESC	embryonic stem cell:	n/a	n/a
39	TAF1	chr6:127840188-127840946	H1-neurons	neurons:	n/a	n/a
40	PBX3	chr6:127840001-127840727	SK-N-SH	brain:	n/a	n/a
41	POLR2A	chr6:127840221-127840616	U87	brain:	n/a	n/a
42	MXI1	chr6:127835445-127841937	SK-N-SH	brain:	n/a	n/a
43	TCF12	chr6:127840302-127840642	H1-hESC	embryonic stem cell:	n/a	chr6:127840462-127840469
44	CTBP2	chr6:127839446-127840749	H1-hESC	embryonic stem cell:	n/a	n/a
45	POLR2A	chr6:127839633-127840865	SK-N-MC	brain:	n/a	n/a
46	NR3C1	chr6:127840317-127840658	A549	lung:	n/a	n/a
47	ATF2	chr6:127840358-127840802	H1-hESC	embryonic stem cell:	n/a	n/a
48	REST	chr6:127840272-127840788	H1-hESC	embryonic stem cell:	n/a	n/a
49	PBX3	chr6:127839771-127840773	SK-N-SH	brain:	n/a	n/a
50	YY1	chr6:127839572-127840744	H1-hESC	embryonic stem cell:	n/a	chr6:127840539-127840550 chr6:127840197-127840208

Variant related genes	Relation type
SOGA3	TF binding region
C6orf58	TF binding region
ENSG00000255330	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs61656375	1.00[AMR][1000 genomes]
rs73771682	1.00[AMR][1000 genomes]
rs73771687	1.00[AMR][1000 genomes]
rs73771689	1.00[AMR][1000 genomes]
rs73771691	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966660	chr6:127838481-127890221	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127835600-127841000	Active TSS	H9 Cell Line	embryonic stem cell
2	chr6:127835600-127841200	Active TSS	Fetal Brain Female	brain
3	chr6:127835600-127841400	Active TSS	Fetal Brain Male	brain
4	chr6:127835800-127841400	Active TSS	Brain Angular Gyrus	brain
5	chr6:127836000-127840800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:127836200-127841200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:127836400-127841400	Active TSS	H1 Cell Line	embryonic stem cell
8	chr6:127836400-127841600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:127838000-127841400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:127838200-127841200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:127838400-127841000	Active TSS	A549	lung
12	chr6:127839000-127841000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:127839000-127841000	Active TSS	Brain Anterior Caudate	brain
14	chr6:127839200-127840400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:127839200-127840800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:127839200-127840800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:127839200-127841000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
18	chr6:127839200-127841000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:127839200-127841000	Active TSS	Brain Inferior Temporal Lobe	brain
20	chr6:127839200-127841000	Active TSS	NHLF	lung
21	chr6:127839200-127841200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:127839400-127840400	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
23	chr6:127839400-127840600	Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr6:127839400-127840600	Active TSS	NHDF-Ad	bronchial
25	chr6:127839400-127840800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr6:127839400-127840800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:127839400-127840800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:127839400-127840800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:127839400-127841000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:127839400-127841400	Active TSS	ES-I3 Cell Line	embryonic stem cell
31	chr6:127839600-127840400	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:127839600-127840400	Bivalent Enhancer	Adipose Nuclei	Adipose
33	chr6:127839600-127840400	Bivalent Enhancer	HUVEC	blood vessel
34	chr6:127839600-127840600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
35	chr6:127839600-127840600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
36	chr6:127839600-127840600	Active TSS	NH-A	brain
37	chr6:127839600-127840800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:127839600-127840800	Active TSS	Cortex derived primary cultured neurospheres	brain
39	chr6:127839600-127840800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:127839600-127840800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
41	chr6:127839600-127840800	Bivalent Enhancer	Fetal Thymus	thymus
42	chr6:127839800-127840400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:127839800-127840400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
44	chr6:127839800-127840400	Bivalent Enhancer	Left Ventricle	heart
45	chr6:127839800-127840400	Bivalent/Poised TSS	NHEK	skin
46	chr6:127839800-127840600	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
47	chr6:127839800-127840600	Enhancers	Lung	lung
48	chr6:127839800-127840600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
49	chr6:127839800-127840800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:127839800-127840800	Active TSS	Brain Hippocampus Middle	brain

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