Variant report

Variant	rs73772216
Chromosome Location	chr5:79363521-79363522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79363092..79365319-chr5:79367879..79369894,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SERINC5-1	chr5:79363262-79363704	NONHSAT102386

Variant related genes	Relation type
ENSG00000113296	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs59318719	1.00[AFR][1000 genomes]
rs59884398	1.00[AFR][1000 genomes]
rs73770692	1.00[AFR][1000 genomes]
rs73770695	1.00[AFR][1000 genomes]
rs73770697	1.00[AFR][1000 genomes]
rs73772226	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79338200-79363600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr5:79338200-79367600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr5:79345200-79364200	Weak transcription	Right Ventricle	heart
4	chr5:79348200-79366400	Weak transcription	Brain Substantia Nigra	brain
5	chr5:79351600-79379200	Weak transcription	Pancreas	Pancrea
6	chr5:79352000-79365200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:79352000-79365600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:79352000-79365800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:79352400-79378200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr5:79353200-79365600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr5:79353600-79365600	Weak transcription	Fetal Intestine Small	intestine
12	chr5:79354600-79378400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr5:79356400-79366800	Weak transcription	Brain Hippocampus Middle	brain
14	chr5:79356600-79373800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr5:79356800-79365000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr5:79357000-79373200	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr5:79357200-79363800	Weak transcription	Fetal Muscle Leg	muscle
18	chr5:79357200-79372800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr5:79357800-79367800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr5:79358400-79363600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr5:79358400-79373600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr5:79359600-79378200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr5:79360000-79365200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:79360000-79378200	Weak transcription	Brain Angular Gyrus	brain
25	chr5:79361000-79363600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:79361000-79374400	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr5:79361200-79365600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr5:79361400-79365200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:79361400-79365400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr5:79361400-79366600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr5:79361400-79378400	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr5:79361600-79378400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr5:79361800-79378400	Strong transcription	Primary T cells from cord blood	blood
34	chr5:79362200-79367200	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr5:79362200-79367200	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr5:79362600-79377800	Weak transcription	Brain Germinal Matrix	brain
37	chr5:79362600-79378600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr5:79362800-79367000	Weak transcription	Brain Anterior Caudate	brain
39	chr5:79362800-79372600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr5:79363000-79378800	Weak transcription	Thymus	Thymus
41	chr5:79363200-79363600	Enhancers	Fetal Intestine Large	intestine
42	chr5:79363200-79365200	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr5:79363200-79366400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr5:79363400-79364000	Strong transcription	Left Ventricle	heart
45	chr5:79363400-79364200	Strong transcription	Brain Cingulate Gyrus	brain
46	chr5:79363400-79364200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
47	chr5:79363400-79364400	Strong transcription	Fetal Muscle Trunk	muscle
48	chr5:79363400-79366800	Enhancers	Primary B cells from cord blood	blood

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