Variant report

Variant	rs73772226
Chromosome Location	chr5:79385662-79385663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs59318719	1.00[AFR][1000 genomes]
rs59884398	1.00[AFR][1000 genomes]
rs73770692	1.00[AFR][1000 genomes]
rs73770695	1.00[AFR][1000 genomes]
rs73770697	1.00[AFR][1000 genomes]
rs73772216	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79366000-79388000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:79366200-79392400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:79379400-79388200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:79379400-79393200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:79379400-79400600	Weak transcription	Left Ventricle	heart
6	chr5:79379600-79387400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr5:79379600-79387600	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr5:79379600-79387600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr5:79379600-79387600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr5:79379600-79388000	Weak transcription	Primary T cells from cord blood	blood
11	chr5:79382000-79393200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr5:79382200-79387800	Weak transcription	Brain Anterior Caudate	brain
13	chr5:79382400-79386800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:79385000-79385800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:79385000-79388400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr5:79385000-79389400	Enhancers	HepG2	liver
17	chr5:79385200-79389400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr5:79385400-79389000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr5:79385400-79389200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links