Variant report

Variant	rs73772545
Chromosome Location	chr5:68654754-68654755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:68651096..68653691-chr5:68653964..68655664,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs17236219	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17236380	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17236422	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17236450	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17236618	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17236639	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4252222	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4252226	1.00[EUR][1000 genomes]
rs4252229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55754329	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55764482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56112110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56362385	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57344277	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57402724	1.00[EUR][1000 genomes]
rs57714822	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58172827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58381452	1.00[EUR][1000 genomes]
rs58742544	1.00[EUR][1000 genomes]
rs59233462	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59776629	1.00[EUR][1000 genomes]
rs59799008	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60644166	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61244656	1.00[EUR][1000 genomes]
rs61290150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6861518	1.00[EUR][1000 genomes]
rs6876889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772537	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772544	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772550	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7725200	1.00[EUR][1000 genomes]
rs8192269	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018151	chr5:68377118-68667581	Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1035004	chr5:68405526-68670101	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv881767	chr5:68625786-68733698	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68638000-68660200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr5:68639200-68663400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:68643000-68664400	Weak transcription	Colonic Mucosa	Colon
4	chr5:68643200-68663200	Weak transcription	Small Intestine	intestine
5	chr5:68643600-68655600	Weak transcription	Fetal Heart	heart
6	chr5:68643800-68660400	Weak transcription	NHEK	skin
7	chr5:68643800-68660800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr5:68643800-68663600	Weak transcription	Brain Angular Gyrus	brain
9	chr5:68644000-68660600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr5:68644200-68660200	Weak transcription	HSMMtube	muscle
11	chr5:68644800-68658200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:68644800-68660800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:68645200-68660600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr5:68645600-68658400	Weak transcription	Gastric	stomach
15	chr5:68645800-68656000	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr5:68645800-68660800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr5:68645800-68663400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:68646200-68660400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr5:68646200-68661000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr5:68646200-68661000	Weak transcription	Pancreas	Pancrea
21	chr5:68646400-68658000	Weak transcription	Lung	lung
22	chr5:68646400-68658200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr5:68646400-68660800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr5:68646600-68660400	Weak transcription	Ovary	ovary
25	chr5:68646600-68661000	Weak transcription	Psoas Muscle	Psoas
26	chr5:68646800-68660400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr5:68647000-68660200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr5:68647200-68660400	Weak transcription	NHLF	lung
29	chr5:68647400-68660400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr5:68647400-68660400	Weak transcription	Brain Hippocampus Middle	brain
31	chr5:68647400-68660400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr5:68647400-68663400	Weak transcription	Fetal Brain Male	brain
33	chr5:68647400-68663800	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr5:68648200-68658000	Weak transcription	Brain Anterior Caudate	brain
35	chr5:68648400-68663400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr5:68648600-68660200	Weak transcription	Fetal Kidney	kidney
37	chr5:68648800-68658000	Weak transcription	Fetal Brain Female	brain
38	chr5:68649000-68658200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr5:68649000-68660200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr5:68649200-68663600	Weak transcription	Brain Substantia Nigra	brain
41	chr5:68649400-68663400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr5:68650000-68658200	Weak transcription	Thymus	Thymus
43	chr5:68650200-68656600	Strong transcription	HSMM	muscle
44	chr5:68650200-68658200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr5:68650600-68655600	Weak transcription	A549	lung
46	chr5:68650600-68658000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr5:68650600-68660200	Weak transcription	Hela-S3	cervix
48	chr5:68651000-68658600	Weak transcription	HMEC	breast
49	chr5:68651000-68659800	Weak transcription	NH-A	brain
50	chr5:68651200-68656600	Weak transcription	Placenta	Placenta

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