Variant report

Variant	rs73772550
Chromosome Location	chr5:68674421-68674422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:68665185..68668152-chr5:68673816..68676048,2	MCF-7	breast:
2	chr5:68665954..68668664-chr5:68673852..68678917,5	K562	blood:
3	chr5:68674092..68677443-chr5:68678943..68682097,4	K562	blood:

Variant related genes	Relation type
ENSG00000085231	Chromatin interaction
ENSG00000152942	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs17236219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17236380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17236422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17236450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17236618	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17236639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4252222	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4252226	1.00[EUR][1000 genomes]
rs4252229	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55754329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55764482	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56112110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56362385	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57344277	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57402724	1.00[EUR][1000 genomes]
rs57714822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58172827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58381452	1.00[EUR][1000 genomes]
rs58742544	1.00[EUR][1000 genomes]
rs59233462	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59776629	1.00[EUR][1000 genomes]
rs59799008	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60644166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61244656	1.00[EUR][1000 genomes]
rs61290150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6861518	1.00[EUR][1000 genomes]
rs6876889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772537	1.00[AMR][1000 genomes]
rs73772541	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772544	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73772545	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7725200	1.00[EUR][1000 genomes]
rs8192269	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881767	chr5:68625786-68733698	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3425236	chr5:68672546-68674544	Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68666200-68678000	Weak transcription	Spleen	Spleen
2	chr5:68666600-68677800	Weak transcription	Colonic Mucosa	Colon
3	chr5:68666600-68677800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:68666600-68681000	Weak transcription	Lung	lung
5	chr5:68666600-68689600	Weak transcription	Aorta	Aorta
6	chr5:68666600-68689800	Weak transcription	Gastric	stomach
7	chr5:68666600-68689800	Weak transcription	Right Ventricle	heart
8	chr5:68666600-68696200	Weak transcription	Pancreas	Pancrea
9	chr5:68666600-68705000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:68666600-68710800	Weak transcription	Esophagus	oesophagus
11	chr5:68666800-68676600	Weak transcription	Thymus	Thymus
12	chr5:68666800-68677800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr5:68666800-68677800	Weak transcription	Fetal Kidney	kidney
14	chr5:68666800-68710600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:68666800-68710600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr5:68666800-68710800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:68666800-68710800	Weak transcription	Psoas Muscle	Psoas
18	chr5:68667000-68677800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr5:68667000-68684600	Weak transcription	Fetal Heart	heart
20	chr5:68667000-68690400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr5:68667200-68710400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr5:68667200-68710800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr5:68667800-68677800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr5:68667800-68679600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr5:68667800-68710600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr5:68668000-68713000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:68668800-68683600	Weak transcription	Fetal Brain Male	brain
28	chr5:68668800-68712400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:68669200-68681800	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr5:68669600-68674800	Strong transcription	Placenta	Placenta
31	chr5:68669600-68674800	Strong transcription	Dnd41	blood
32	chr5:68669600-68675000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr5:68669600-68675000	Strong transcription	Osteobl	bone
34	chr5:68669600-68675200	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr5:68669600-68697600	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr5:68669600-68701200	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr5:68669600-68702200	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr5:68669600-68702800	Strong transcription	Liver	Liver
39	chr5:68669800-68674800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr5:68669800-68676200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr5:68669800-68678400	Strong transcription	NHDF-Ad	bronchial
42	chr5:68669800-68697600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr5:68669800-68700400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr5:68669800-68700800	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr5:68670000-68674800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr5:68670000-68674800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr5:68670200-68700800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr5:68670400-68674800	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr5:68670400-68675000	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr5:68670400-68675200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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