Variant report

Variant	rs73772915
Chromosome Location	chr5:92956422-92956423
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:92918392..92920422-chr5:92954459..92956574,2	MCF-7	breast:

miRNA name	Chromosome Location	mirBase accession
hsa-miR-2277-3p	chr5:92956416-92956436	MIMAT0011777

Variant related genes	Relation type
ENSG00000175745	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73772914	1.00[AMR][1000 genomes]
rs73772916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772928	1.00[AMR][1000 genomes]
rs73772932	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451945	chr5:92858750-93024740	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv830404	chr5:92868336-93048257	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	esv1819334	chr5:92892591-92956733	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv823130	chr5:92896346-92966016	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv823132	chr5:92898512-92969668	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92955600-92958200	Active TSS	Fetal Brain Female	brain
2	chr5:92955600-92958600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr5:92955800-92957200	Active TSS	Brain Germinal Matrix	brain
4	chr5:92955800-92957400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr5:92955800-92957400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:92955800-92957600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:92955800-92957600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:92955800-92957600	Active TSS	HSMMtube	muscle
9	chr5:92955800-92957600	Active TSS	NHLF	lung
10	chr5:92955800-92957800	Active TSS	Stomach Smooth Muscle	stomach
11	chr5:92955800-92958000	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr5:92955800-92958000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:92955800-92958200	Active TSS	Brain Angular Gyrus	brain
14	chr5:92956000-92956600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
15	chr5:92956000-92956600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
16	chr5:92956000-92956600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr5:92956000-92956600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
18	chr5:92956000-92956600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:92956000-92956600	Enhancers	Fetal Heart	heart
20	chr5:92956000-92956800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr5:92956000-92956800	Flanking Active TSS	HUVEC	blood vessel
22	chr5:92956000-92957200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr5:92956000-92957200	Active TSS	Fetal Muscle Leg	muscle
24	chr5:92956000-92957200	Active TSS	Placenta	Placenta
25	chr5:92956000-92957200	Active TSS	GM12878-XiMat	blood
26	chr5:92956000-92957400	Active TSS	A549	lung
27	chr5:92956000-92957600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
28	chr5:92956000-92957600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
29	chr5:92956000-92957600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr5:92956000-92957600	Active TSS	Fetal Kidney	kidney
31	chr5:92956000-92957600	Active TSS	Ovary	ovary
32	chr5:92956000-92957600	Active TSS	HSMM	muscle
33	chr5:92956000-92957600	Active TSS	NHDF-Ad	bronchial
34	chr5:92956000-92957800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
35	chr5:92956000-92957800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr5:92956000-92957800	Active TSS	Rectal Smooth Muscle	rectum
37	chr5:92956000-92957800	Active TSS	Right Ventricle	heart
38	chr5:92956000-92958000	Active TSS	Brain Cingulate Gyrus	brain
39	chr5:92956000-92958200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr5:92956200-92956600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
41	chr5:92956200-92956600	Flanking Active TSS	NHEK	skin
42	chr5:92956200-92956800	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
43	chr5:92956200-92956800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
44	chr5:92956200-92956800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
45	chr5:92956200-92956800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr5:92956200-92956800	Flanking Active TSS	Adipose Nuclei	Adipose
47	chr5:92956200-92956800	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
48	chr5:92956200-92956800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
49	chr5:92956200-92956800	Flanking Active TSS	HMEC	breast
50	chr5:92956200-92957200	Active TSS	Duodenum Smooth Muscle	Duodenum

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