Variant report

Variant	rs73772916
Chromosome Location	chr5:92958201-92958202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:92957863-92958450	H1-neurons	neurons:	n/a	n/a
2	REST	chr5:92956916-92958684	H1-neurons	neurons:	n/a	chr5:92958262-92958275 chr5:92957167-92957176
3	CEBPB	chr5:92957960-92958466	Hela-S3	cervix:	n/a	chr5:92958091-92958104 chr5:92958092-92958103
4	CEBPB	chr5:92957916-92958297	HepG2	liver:	n/a	chr5:92958091-92958104 chr5:92958092-92958103
5	RAD21	chr5:92955577-92958984	SK-N-SH	brain:	n/a	chr5:92957068-92957078
6	GATA2	chr5:92957086-92958343	SH-SY5Y	brain:	n/a	chr5:92957098-92957107 chr5:92958333-92958343
7	RFX5	chr5:92958014-92958282	HepG2	liver:	n/a	chr5:92958072-92958087 chr5:92958154-92958163 chr5:92958072-92958087 chr5:92958072-92958087 chr5:92958151-92958166 chr5:92958150-92958164 chr5:92958152-92958166 chr5:92958149-92958165
8	CEBPB	chr5:92957907-92958626	IMR90	lung:	n/a	chr5:92958091-92958104 chr5:92958092-92958103
9	RAD21	chr5:92957958-92958339	SK-N-SH_RA	brain:	n/a	n/a
10	CEBPB	chr5:92957737-92958524	A549	lung:	n/a	chr5:92958091-92958104 chr5:92958092-92958103
11	MXI1	chr5:92955935-92958518	IMR90	lung:	n/a	n/a
12	POLR2A	chr5:92957851-92958471	H1-neurons	neurons:	n/a	n/a
13	POLR2A	chr5:92956131-92958546	U87	brain:	n/a	n/a
14	MXI1	chr5:92958000-92958271	HepG2	liver:	n/a	n/a
15	CHD1	chr5:92956041-92958478	IMR90	lung:	n/a	n/a
16	CEBPB	chr5:92958006-92958295	MCF-7	breast:	n/a	chr5:92958091-92958104 chr5:92958092-92958103
17	YY1	chr5:92957950-92958401	SK-N-SH_RA	brain:	n/a	n/a
18	RFX5	chr5:92958087-92958214	GM12878	blood:	n/a	chr5:92958154-92958163 chr5:92958151-92958166 chr5:92958150-92958164 chr5:92958152-92958166 chr5:92958149-92958165
19	POLR2A	chr5:92956171-92958424	IMR90	lung:	n/a	n/a
20	ARID3A	chr5:92958097-92958251	HepG2	liver:	n/a	n/a
21	MXI1	chr5:92955978-92959433	SK-N-SH	brain:	n/a	n/a
22	CEBPB	chr5:92957936-92958256	H1-hESC	embryonic stem cell:	n/a	chr5:92958091-92958104 chr5:92958092-92958103

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:92956753..92958521-chr5:92999951..93002284,2	MCF-7	breast:

Variant related genes	Relation type
MIR2277	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73772914	1.00[AMR][1000 genomes]
rs73772915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772928	1.00[AMR][1000 genomes]
rs73772932	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451945	chr5:92858750-93024740	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv830404	chr5:92868336-93048257	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv823130	chr5:92896346-92966016	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv823132	chr5:92898512-92969668	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92955600-92958600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr5:92957200-92958400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr5:92957200-92959200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr5:92957400-92958400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:92957400-92959000	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr5:92957600-92958400	Enhancers	Primary T cells fromperipheralblood	blood
7	chr5:92957600-92958600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:92957600-92958600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr5:92957600-92958600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:92957600-92959000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr5:92957600-92959400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr5:92957800-92958400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:92957800-92958400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr5:92957800-92958400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:92957800-92958400	Enhancers	Adipose Nuclei	Adipose
16	chr5:92957800-92958400	Enhancers	Fetal Heart	heart
17	chr5:92957800-92958400	Enhancers	NH-A	brain
18	chr5:92957800-92958400	Enhancers	NHDF-Ad	bronchial
19	chr5:92957800-92958600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr5:92957800-92970200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr5:92958000-92958400	Flanking Active TSS	Brain Anterior Caudate	brain
22	chr5:92958000-92958400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr5:92958000-92958400	Enhancers	Stomach Smooth Muscle	stomach
24	chr5:92958000-92958400	Enhancers	NHLF	lung
25	chr5:92958200-92958400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:92958200-92958400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:92958200-92958400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr5:92958200-92958400	Flanking Active TSS	Brain Angular Gyrus	brain
29	chr5:92958200-92958400	Flanking Active TSS	Brain Hippocampus Middle	brain
30	chr5:92958200-92958400	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr5:92958200-92958400	Flanking Active TSS	Fetal Brain Female	brain
32	chr5:92958200-92958400	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr5:92958200-92958400	Flanking Active TSS	Osteobl	bone
34	chr5:92958200-92958600	Flanking Active TSS	Fetal Brain Male	brain
35	chr5:92958200-92958800	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr5:92958200-92959000	Weak transcription	Brain Substantia Nigra	brain
37	chr5:92958200-92959200	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links