Variant report

Variant	rs73773155
Chromosome Location	chr5:91122605-91122606
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10052845	1.00[AMR][1000 genomes]
rs13353886	1.00[AMR][1000 genomes]
rs13361647	1.00[AMR][1000 genomes]
rs28699017	1.00[AMR][1000 genomes]
rs55661621	0.84[AFR][1000 genomes]
rs58149694	0.84[AFR][1000 genomes]
rs58871590	0.90[AFR][1000 genomes]
rs61466587	0.84[AFR][1000 genomes]
rs73773154	1.00[AFR][1000 genomes]
rs73773156	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773157	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773160	1.00[AMR][1000 genomes]
rs73773162	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773167	0.95[AFR][1000 genomes]
rs73773174	0.84[AFR][1000 genomes]
rs73773175	0.84[AFR][1000 genomes]
rs73773179	0.84[AFR][1000 genomes]
rs73773180	0.84[AFR][1000 genomes]
rs73773181	0.84[AFR][1000 genomes]
rs73773182	0.84[AFR][1000 genomes]
rs73773188	0.84[AFR][1000 genomes]
rs73773189	0.84[AFR][1000 genomes]
rs9293583	1.00[AMR][1000 genomes]
rs9293584	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830395	chr5:90955521-91135272	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv882370	chr5:90986181-91287437	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv882372	chr5:91018052-91221647	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1017504	chr5:91092920-91178854	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv830396	chr5:91121355-91343236	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91121400-91134000	Weak transcription	Fetal Brain Male	brain
2	chr5:91122200-91122800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr5:91122200-91122800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr5:91122400-91122800	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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