Variant report

Variant	rs73773174
Chromosome Location	chr5:91160727-91160728
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55661621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58149694	1.00[AFR][1000 genomes]
rs61466587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773154	0.84[AFR][1000 genomes]
rs73773155	0.84[AFR][1000 genomes]
rs73773156	0.90[AFR][1000 genomes]
rs73773157	1.00[AFR][1000 genomes]
rs73773162	0.90[AFR][1000 genomes]
rs73773167	0.90[AFR][1000 genomes]
rs73773175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773186	0.90[AFR][1000 genomes]
rs73773188	1.00[AFR][1000 genomes]
rs73773189	1.00[AFR][1000 genomes]
rs73773197	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882370	chr5:90986181-91287437	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882372	chr5:91018052-91221647	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1017504	chr5:91092920-91178854	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv830396	chr5:91121355-91343236	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv882373	chr5:91144658-91275313	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv882374	chr5:91144658-91287437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv882375	chr5:91144658-91383848	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91160200-91161000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:91160400-91162400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr5:91160400-91162600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:91160400-91163200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:91160600-91161000	Enhancers	Fetal Brain Male	brain
6	chr5:91160600-91161200	Enhancers	Brain Germinal Matrix	brain
7	chr5:91160600-91161800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:91160600-91162000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:91160600-91162000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr5:91160600-91162400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:91160600-91162400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr5:91160600-91162600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr5:91160600-91162600	Enhancers	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links