Variant report

Variant	rs73773328
Chromosome Location	chr6:126258837-126258838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56144043	1.00[AMR][1000 genomes]
rs73773351	1.00[AMR][1000 genomes]
rs73773365	1.00[AMR][1000 genomes]
rs73773366	1.00[AMR][1000 genomes]
rs73773373	1.00[AMR][1000 genomes]
rs9491555	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830796	chr6:126165633-126336168	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1019490	chr6:126248596-126542296	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1022677	chr6:126256752-126516305	Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:126244600-126261600	Weak transcription	NHLF	lung
2	chr6:126245000-126261200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:126245400-126265600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:126245800-126261800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:126246200-126264000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:126246400-126261000	Weak transcription	HMEC	breast
7	chr6:126246400-126261200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:126246400-126261400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:126246400-126262600	Weak transcription	Stomach Mucosa	stomach
10	chr6:126246400-126263000	Weak transcription	Esophagus	oesophagus
11	chr6:126246400-126263000	Weak transcription	Pancreas	Pancrea
12	chr6:126246400-126274400	Weak transcription	Spleen	Spleen
13	chr6:126246600-126259000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:126249200-126265600	Weak transcription	Aorta	Aorta
15	chr6:126250000-126260800	Weak transcription	NHEK	skin
16	chr6:126250200-126260800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:126250200-126261000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:126250200-126261400	Weak transcription	HSMMtube	muscle
19	chr6:126250200-126261400	Weak transcription	Osteobl	bone
20	chr6:126250200-126261600	Weak transcription	Placenta	Placenta
21	chr6:126250200-126261600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:126250200-126263800	Weak transcription	Lung	lung
23	chr6:126250200-126264600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:126250200-126265200	Weak transcription	Brain Anterior Caudate	brain
25	chr6:126250400-126263800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr6:126250800-126265600	Weak transcription	Brain Substantia Nigra	brain
27	chr6:126251400-126261400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:126251600-126263000	Weak transcription	Fetal Intestine Small	intestine
29	chr6:126252000-126260400	Weak transcription	K562	blood
30	chr6:126252200-126263800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr6:126252600-126260000	Weak transcription	Fetal Intestine Large	intestine
32	chr6:126252600-126260200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:126252600-126262800	Weak transcription	Duodenum Mucosa	Duodenum
34	chr6:126252600-126264000	Weak transcription	Liver	Liver
35	chr6:126252800-126261600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:126252800-126264600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr6:126253000-126261200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:126253000-126263800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr6:126253000-126264800	Weak transcription	Adipose Nuclei	Adipose
40	chr6:126253000-126265200	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr6:126253200-126260200	Weak transcription	A549	lung
42	chr6:126253200-126263800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:126253400-126265400	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr6:126253600-126261000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:126253600-126261600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:126253600-126264800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr6:126255000-126261000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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