Variant report

Variant	rs73773365
Chromosome Location	chr6:126433742-126433743
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:126354547..126355342-chr6:126432856..126433773,4	MCF-7	breast:
2	chr6:126432609..126437116-chr6:126437437..126440829,5	K562	blood:
3	chr6:126432161..126435100-chr6:126436866..126440009,5	K562	blood:
4	chr6:126431803..126434521-chr6:126491012..126493792,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs56144043	1.00[AMR][1000 genomes]
rs58690278	1.00[AMR][1000 genomes]
rs58864666	1.00[AMR][1000 genomes]
rs59571620	1.00[AMR][1000 genomes]
rs601769	1.00[AMR][1000 genomes]
rs73771439	1.00[AMR][1000 genomes]
rs73771460	1.00[AMR][1000 genomes]
rs73773328	1.00[AMR][1000 genomes]
rs73773351	1.00[AMR][1000 genomes]
rs73773366	1.00[AMR][1000 genomes]
rs73773373	1.00[AMR][1000 genomes]
rs9491555	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019490	chr6:126248596-126542296	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1022677	chr6:126256752-126516305	Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1015834	chr6:126376458-126634409	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv3395170	chr6:126423618-126590175	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:126383000-126456800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:126387600-126463200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:126400600-126451600	Weak transcription	Liver	Liver
4	chr6:126403400-126456800	Weak transcription	Psoas Muscle	Psoas
5	chr6:126407800-126453600	Weak transcription	GM12878-XiMat	blood
6	chr6:126417800-126459400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:126418800-126451800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:126421800-126433800	Weak transcription	NHEK	skin
9	chr6:126423800-126455200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:126426800-126435000	Weak transcription	HepG2	liver
11	chr6:126429200-126438600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:126429200-126451800	Weak transcription	Ovary	ovary
13	chr6:126429400-126438800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:126429600-126453200	Weak transcription	Adipose Nuclei	Adipose
15	chr6:126431000-126434800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:126431800-126433800	Flanking Active TSS	K562	blood
17	chr6:126431800-126434000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:126432000-126434200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:126432000-126443400	Weak transcription	Fetal Brain Male	brain
20	chr6:126432200-126434000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:126432600-126439000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:126432800-126433800	Enhancers	Primary hematopoietic stem cells	blood
23	chr6:126433000-126433800	Enhancers	Stomach Mucosa	stomach
24	chr6:126433200-126433800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:126433200-126434000	Enhancers	Osteobl	bone
26	chr6:126433200-126438800	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr6:126433400-126439000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:126433600-126434200	Bivalent Enhancer	Fetal Heart	heart
29	chr6:126433600-126483800	Weak transcription	Aorta	Aorta

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