Variant report

Variant	rs58690278
Chromosome Location	chr6:126582260-126582261
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56144043	1.00[AMR][1000 genomes]
rs57208823	1.00[AMR][1000 genomes]
rs58864666	1.00[AMR][1000 genomes]
rs59571620	1.00[AMR][1000 genomes]
rs601769	1.00[AMR][1000 genomes]
rs73771439	1.00[AMR][1000 genomes]
rs73771460	1.00[AMR][1000 genomes]
rs73771465	1.00[AMR][1000 genomes]
rs73773351	1.00[AMR][1000 genomes]
rs73773365	1.00[AMR][1000 genomes]
rs73773366	1.00[AMR][1000 genomes]
rs73773373	1.00[AMR][1000 genomes]
rs9491555	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015834	chr6:126376458-126634409	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3395170	chr6:126423618-126590175	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:126579400-126585000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:126579600-126582800	Weak transcription	Aorta	Aorta
3	chr6:126579600-126582800	Weak transcription	Pancreas	Pancrea
4	chr6:126582200-126583600	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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