Variant report

Variant	rs58864666
Chromosome Location	chr6:126540177-126540178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56144043	1.00[AMR][1000 genomes]
rs57208823	1.00[AMR][1000 genomes]
rs58690278	1.00[AMR][1000 genomes]
rs59571620	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs601769	1.00[AMR][1000 genomes]
rs73771439	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771460	1.00[AMR][1000 genomes]
rs73771465	1.00[AMR][1000 genomes]
rs73773351	1.00[AMR][1000 genomes]
rs73773365	1.00[AMR][1000 genomes]
rs73773366	1.00[AMR][1000 genomes]
rs73773373	1.00[AMR][1000 genomes]
rs9491555	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019490	chr6:126248596-126542296	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1015834	chr6:126376458-126634409	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3395170	chr6:126423618-126590175	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:126516600-126541000	Weak transcription	Liver	Liver
2	chr6:126525600-126545800	Weak transcription	Esophagus	oesophagus
3	chr6:126532000-126540800	Weak transcription	HSMMtube	muscle
4	chr6:126537000-126545600	Weak transcription	Pancreas	Pancrea
5	chr6:126537400-126541800	Weak transcription	Left Ventricle	heart
6	chr6:126537600-126540400	Weak transcription	Fetal Intestine Small	intestine
7	chr6:126537600-126547600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:126537800-126547000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:126538200-126549200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:126538800-126540200	Strong transcription	Ovary	ovary
11	chr6:126538800-126541400	Weak transcription	Brain Anterior Caudate	brain
12	chr6:126539200-126545800	Weak transcription	Aorta	Aorta
13	chr6:126539600-126545400	Weak transcription	HepG2	liver
14	chr6:126539600-126545600	Weak transcription	Gastric	stomach
15	chr6:126539800-126545600	Weak transcription	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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