Variant report

Variant	rs73773556
Chromosome Location	chr5:93342280-93342281
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55957595	1.00[AMR][1000 genomes]
rs57646264	1.00[AMR][1000 genomes]
rs59281012	1.00[AMR][1000 genomes]
rs59660668	1.00[AMR][1000 genomes]
rs73773590	1.00[AMR][1000 genomes]
rs73773600	1.00[AMR][1000 genomes]
rs73773617	1.00[AMR][1000 genomes]
rs73773619	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93297400-93349600	Weak transcription	Aorta	Aorta
2	chr5:93327000-93394600	Weak transcription	Small Intestine	intestine
3	chr5:93329200-93357000	Weak transcription	HSMM	muscle
4	chr5:93331000-93353000	Weak transcription	Fetal Thymus	thymus
5	chr5:93331400-93347000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:93331600-93357200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr5:93335200-93348200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr5:93337000-93348200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr5:93337800-93348200	Weak transcription	Fetal Lung	lung
10	chr5:93337800-93350800	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr5:93338200-93346600	Weak transcription	Primary B cells from cord blood	blood
12	chr5:93338200-93348200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr5:93338200-93350600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr5:93341000-93348200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr5:93341200-93348000	Weak transcription	Fetal Intestine Small	intestine
16	chr5:93341200-93357400	Weak transcription	Fetal Stomach	stomach
17	chr5:93341600-93348200	Weak transcription	Dnd41	blood
18	chr5:93341600-93350800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr5:93341800-93348200	Weak transcription	Brain Angular Gyrus	brain
20	chr5:93342000-93346600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:93342200-93346800	Weak transcription	Primary T cells from cord blood	blood
22	chr5:93342200-93348000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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