Variant report

Variant	rs73773619
Chromosome Location	chr5:93621598-93621599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55957595	1.00[AMR][1000 genomes]
rs57646264	1.00[AMR][1000 genomes]
rs59281012	1.00[AMR][1000 genomes]
rs59323020	1.00[AMR][1000 genomes]
rs59660668	1.00[AMR][1000 genomes]
rs60416738	1.00[AMR][1000 genomes]
rs60417818	1.00[AMR][1000 genomes]
rs60596755	1.00[AMR][1000 genomes]
rs73773556	1.00[AMR][1000 genomes]
rs73773590	1.00[AMR][1000 genomes]
rs73773600	1.00[AMR][1000 genomes]
rs73773617	1.00[AMR][1000 genomes]
rs73773620	1.00[AMR][1000 genomes]
rs73773650	1.00[AMR][1000 genomes]
rs73773653	1.00[AMR][1000 genomes]
rs73773657	1.00[AMR][1000 genomes]
rs73773659	1.00[AMR][1000 genomes]
rs73773680	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023191	chr5:93351646-93947928	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv537808	chr5:93351646-93947928	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv2753025	chr5:93356544-93812844	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1024014	chr5:93460441-93655609	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv830406	chr5:93514329-93683512	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1027890	chr5:93584978-93873704	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
7	nsv537809	chr5:93584978-93873704	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
8	nsv882385	chr5:93589609-93697852	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv823134	chr5:93593894-93664537	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93613000-93622400	Weak transcription	Hela-S3	cervix
2	chr5:93617800-93622200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:93617800-93631000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:93617800-93631400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:93618000-93626600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:93619200-93627800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:93620400-93622800	Enhancers	Fetal Intestine Large	intestine
8	chr5:93620400-93631400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:93621200-93623000	Enhancers	Fetal Intestine Small	intestine
10	chr5:93621400-93621800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:93621400-93621800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr5:93621400-93622000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:93621400-93622200	Enhancers	Fetal Lung	lung
14	chr5:93621400-93622400	Enhancers	Stomach Mucosa	stomach
15	chr5:93621400-93622800	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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