Variant report

Variant	rs73773593
Chromosome Location	chr5:93554233-93554234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12108963	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56139914	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57085081	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59487833	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60583554	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773594	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773595	1.00[AMR][1000 genomes]
rs7712087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1023191	chr5:93351646-93947928	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv537808	chr5:93351646-93947928	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	esv2753025	chr5:93356544-93812844	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv530552	chr5:93416111-93588509	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1024014	chr5:93460441-93655609	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv830406	chr5:93514329-93683512	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93546000-93555000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:93548600-93557400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:93549600-93557200	Weak transcription	Aorta	Aorta
4	chr5:93552000-93554800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:93552200-93554800	Enhancers	HSMMtube	muscle
6	chr5:93552200-93555200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr5:93552200-93555400	Enhancers	HSMM	muscle
8	chr5:93552400-93554600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:93552800-93556800	Weak transcription	Dnd41	blood
10	chr5:93553000-93554800	Enhancers	NHDF-Ad	bronchial
11	chr5:93553200-93576600	Weak transcription	Hela-S3	cervix
12	chr5:93553400-93554800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:93553800-93554400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr5:93553800-93554400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:93553800-93554800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr5:93553800-93554800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:93553800-93554800	Enhancers	NHLF	lung
18	chr5:93553800-93555200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:93554000-93557000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr5:93554200-93554400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr5:93554200-93554400	Enhancers	H1 Cell Line	embryonic stem cell
22	chr5:93554200-93554400	Enhancers	NH-A	brain
23	chr5:93554200-93554800	Enhancers	Osteobl	bone
24	chr5:93554200-93555000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:93554200-93555200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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