Variant report

Variant	rs73773594
Chromosome Location	chr5:93557830-93557831
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:93551666..93553563-chr5:93556034..93558277,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12108963	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55841810	0.86[AFR][1000 genomes]
rs56139914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57085081	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59487833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59827878	0.86[AFR][1000 genomes]
rs60583554	1.00[AMR][1000 genomes]
rs6882733	0.86[AFR][1000 genomes]
rs6884166	0.86[AFR][1000 genomes]
rs73773566	0.80[AFR][1000 genomes]
rs73773567	0.80[AFR][1000 genomes]
rs73773568	0.86[AFR][1000 genomes]
rs73773579	0.86[AFR][1000 genomes]
rs73773581	0.86[AFR][1000 genomes]
rs73773582	0.86[AFR][1000 genomes]
rs73773587	0.86[AFR][1000 genomes]
rs73773592	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773593	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773595	1.00[AMR][1000 genomes]
rs7712087	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1023191	chr5:93351646-93947928	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv537808	chr5:93351646-93947928	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	esv2753025	chr5:93356544-93812844	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv530552	chr5:93416111-93588509	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1024014	chr5:93460441-93655609	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv830406	chr5:93514329-93683512	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93553200-93576600	Weak transcription	Hela-S3	cervix
2	chr5:93554400-93559000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:93554400-93560600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:93555400-93559200	Weak transcription	HSMM	muscle
5	chr5:93555600-93558800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:93555600-93578800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:93556800-93559800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr5:93556800-93561400	Enhancers	Dnd41	blood
9	chr5:93557000-93558400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:93557000-93559000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr5:93557200-93558000	Enhancers	Primary hematopoietic stem cells	blood
12	chr5:93557200-93560200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:93557400-93558200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:93557800-93558800	Weak transcription	Fetal Thymus	thymus

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