Variant report

Variant	rs55841810
Chromosome Location	chr5:93501985-93501986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs28766347	1.00[AMR][1000 genomes]
rs56139914	0.86[AFR][1000 genomes]
rs59487833	0.86[AFR][1000 genomes]
rs59827878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6882733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6884166	1.00[AFR][1000 genomes]
rs73139390	1.00[AMR][1000 genomes]
rs73773566	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773567	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773594	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1023191	chr5:93351646-93947928	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv537808	chr5:93351646-93947928	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	esv2753025	chr5:93356544-93812844	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv530552	chr5:93416111-93588509	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1024014	chr5:93460441-93655609	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93493800-93506600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:93494600-93507000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:93495200-93506400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:93495200-93508400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:93495400-93506200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:93496000-93506200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:93501800-93502200	Enhancers	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links