Variant report

Variant	rs73773566
Chromosome Location	chr5:93490153-93490154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs28766347	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55841810	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56139914	0.80[AFR][1000 genomes]
rs59487833	0.80[AFR][1000 genomes]
rs59827878	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6882733	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6884166	0.93[AFR][1000 genomes]
rs73139390	1.00[AMR][1000 genomes]
rs73773567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773568	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773579	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773581	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773582	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773587	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773594	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1023191	chr5:93351646-93947928	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv537808	chr5:93351646-93947928	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	esv2753025	chr5:93356544-93812844	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv530552	chr5:93416111-93588509	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1024014	chr5:93460441-93655609	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3334488	chr5:93478245-93494451	Strong transcription ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93481400-93493600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr5:93482000-93494800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:93483000-93493800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:93483200-93493400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:93485000-93495400	Weak transcription	Pancreas	Pancrea
6	chr5:93486800-93496800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:93488000-93493800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:93488400-93494600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:93489000-93490400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:93489200-93494600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr5:93489200-93499200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:93489600-93490400	Enhancers	NHLF	lung
13	chr5:93489600-93490400	Enhancers	Osteobl	bone
14	chr5:93489800-93494000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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