Variant report

Variant	rs73774351
Chromosome Location	chr6:131317096-131317097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131315063..131319748-chr6:131319876..131324209,7	MCF-7	breast:
2	chr6:131315398..131317162-chr6:131319335..131320916,2	K562	blood:

Variant related genes	Relation type
ENSG00000079819	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56137242	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58565651	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60494097	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61440162	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774366	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774370	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774377	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774378	0.95[AFR][1000 genomes]
rs73774381	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774383	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774384	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73775905	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73775906	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131306800-131317200	Weak transcription	NHLF	lung
2	chr6:131306800-131317400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:131306800-131320000	Weak transcription	Left Ventricle	heart
4	chr6:131309200-131317200	Weak transcription	Adipose Nuclei	Adipose
5	chr6:131311400-131318400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:131312400-131318400	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:131312600-131317400	Weak transcription	Fetal Stomach	stomach
8	chr6:131312600-131321800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:131313000-131318400	Weak transcription	Fetal Kidney	kidney
10	chr6:131313600-131317400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:131313800-131317600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:131314000-131317600	Enhancers	Placenta	Placenta
13	chr6:131314000-131318000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:131314400-131317400	Weak transcription	HSMM	muscle
15	chr6:131314400-131318000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:131314800-131322200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:131314800-131325000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:131315200-131321400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr6:131315400-131318000	Weak transcription	A549	lung
20	chr6:131315400-131318600	Weak transcription	Right Atrium	heart
21	chr6:131315400-131320000	Weak transcription	Right Ventricle	heart
22	chr6:131315600-131317400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:131315600-131317400	Weak transcription	Small Intestine	intestine
24	chr6:131315600-131318200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr6:131315600-131321800	Weak transcription	Pancreas	Pancrea
26	chr6:131315800-131317200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:131315800-131317200	Weak transcription	HepG2	liver
28	chr6:131315800-131317400	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:131315800-131317600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:131315800-131317800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr6:131315800-131317800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr6:131315800-131317800	Enhancers	K562	blood
33	chr6:131315800-131318000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr6:131315800-131318400	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr6:131315800-131318600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr6:131315800-131320000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:131315800-131321400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:131315800-131321800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr6:131315800-131321800	Weak transcription	Lung	lung
40	chr6:131315800-131323200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr6:131315800-131325800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr6:131316000-131318400	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr6:131316600-131319000	Enhancers	HUVEC	blood vessel
44	chr6:131316800-131317400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:131316800-131317600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:131316800-131317600	Enhancers	Fetal Intestine Large	intestine
47	chr6:131316800-131317600	Enhancers	Gastric	stomach
48	chr6:131316800-131317600	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr6:131316800-131317600	Enhancers	HMEC	breast
50	chr6:131316800-131317800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links