Variant report

Variant	rs73774370
Chromosome Location	chr6:131336859-131336860
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56137242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58565651	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60494097	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61440162	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774351	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774378	1.00[AFR][1000 genomes]
rs73774381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73775905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73775906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131329800-131347400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:131332200-131345400	Weak transcription	Left Ventricle	heart
3	chr6:131332800-131339600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:131333600-131339200	Weak transcription	Pancreas	Pancrea
5	chr6:131333800-131337400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr6:131334000-131337000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:131334000-131337400	Enhancers	Fetal Kidney	kidney
8	chr6:131334400-131337200	Weak transcription	Small Intestine	intestine
9	chr6:131334400-131337400	Enhancers	HMEC	breast
10	chr6:131334600-131338000	Enhancers	Fetal Stomach	stomach
11	chr6:131334600-131338200	Enhancers	HepG2	liver
12	chr6:131334600-131338200	Enhancers	Osteobl	bone
13	chr6:131334600-131339000	Enhancers	Rectal Smooth Muscle	rectum
14	chr6:131334800-131337400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:131334800-131337600	Enhancers	A549	lung
16	chr6:131334800-131342800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:131335000-131337000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr6:131335000-131337200	Weak transcription	HSMMtube	muscle
19	chr6:131335000-131337800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:131335000-131338000	Enhancers	HSMM	muscle
21	chr6:131335200-131337200	Enhancers	NHLF	lung
22	chr6:131335200-131337800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:131335200-131337800	Enhancers	Adipose Nuclei	Adipose
24	chr6:131335200-131337800	Enhancers	Fetal Lung	lung
25	chr6:131335200-131338000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:131335200-131338000	Enhancers	Brain Hippocampus Middle	brain
27	chr6:131335200-131338000	Enhancers	NHDF-Ad	bronchial
28	chr6:131335200-131343200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:131335400-131337000	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr6:131335400-131337000	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr6:131335400-131337000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr6:131335400-131337000	Weak transcription	NH-A	brain
33	chr6:131335400-131337200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr6:131335400-131338000	Enhancers	HUVEC	blood vessel
35	chr6:131335400-131338200	Enhancers	Colon Smooth Muscle	Colon
36	chr6:131335600-131338000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:131335600-131345200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:131335800-131337000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:131335800-131337000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:131335800-131337000	Enhancers	Brain Anterior Caudate	brain
41	chr6:131335800-131337000	Weak transcription	Fetal Muscle Leg	muscle
42	chr6:131336000-131337000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr6:131336000-131337200	Enhancers	Hela-S3	cervix
44	chr6:131336000-131337800	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr6:131336000-131338200	Enhancers	Stomach Smooth Muscle	stomach
46	chr6:131336200-131337400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr6:131336200-131338000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:131336400-131337200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:131336400-131337400	Enhancers	Brain Angular Gyrus	brain
50	chr6:131336400-131337800	Enhancers	Stomach Mucosa	stomach

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